Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3cn8FADPolyamine oxidase FMS1

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3cn8FADPolyamine oxidase FMS1/1.000
1xpqFADPolyamine oxidase FMS1/0.603
3cndFADPolyamine oxidase FMS1/0.577
4echFADPolyamine oxidase FMS1/0.569
3cntFADPolyamine oxidase FMS1/0.560
4fwjFADLysine-specific histone demethylase 1B10.554
5l3dFADLysine-specific histone demethylase 1A10.530
2uxxFAJLysine-specific histone demethylase 1A10.529
2yg7FADPutrescine oxidase/0.528
3zdnFADMonoamine oxidase N1.4.3.40.511
4i58FADCyclohexylamine Oxidase/0.511
3kpfFADPolyamine oxidase1.5.3.140.508
3rhaFDAPutrescine oxidase/0.503
4guuFA9Lysine-specific histone demethylase 1B10.496
1f8rFADL-amino-acid oxidase1.4.3.20.494
3k7tFAD6-hydroxy-L-nicotine oxidase/0.491
2yg4FADPutrescine oxidase/0.489
5g3sFDAFlavin-dependent L-tryptophan oxidase VioA/0.485
2babFADPutative aminooxidase/0.473
3bi2FADPolyamine oxidase FMS1/0.473
1tdnFADL-amino-acid oxidase1.4.3.20.470
2jb1FADL-amino acid oxidase/0.465
3kveFADL-amino-acid oxidase/0.463
2b9xFADPutative aminooxidase/0.461
1h81FADPolyamine oxidase1.5.3.140.450
5g3tFDAFlavin-dependent L-tryptophan oxidase VioA/0.450
2b9yFADPutative aminooxidase/0.449
1tdoFADL-amino-acid oxidase1.4.3.20.448
2ba9FADPutative aminooxidase/0.448
2bacFADPutative aminooxidase/0.443