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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3c50ADPRhodopsin kinase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3c50ADPRhodopsin kinase/1.000
3c4zADPRhodopsin kinase/0.568
4l9i8PRRhodopsin kinase/0.464
4yhjAN2G protein-coupled receptor kinase 42.7.11.160.459
3qc9ADPRhodopsin kinase/0.458
5dt3ATPAurora kinase A2.7.11.10.454
5drdATPAurora kinase A2.7.11.10.451
1zthADPRIO-type serine/threonine-protein kinase Rio12.7.11.10.449
3nynSGVG protein-coupled receptor kinase 62.7.11.160.448
3t8oATPRhodopsin kinase/0.445