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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3beoUD1UDP-N-acetylglucosamine 2-epimerase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3beoUD1UDP-N-acetylglucosamine 2-epimerase/1.000
4eu8COASuccinyl-CoA:acetate CoA-transferase/0.464
2ylrNAPPhenylacetone monooxygenase1.14.13.920.461
1tqf32PBeta-secretase 13.4.23.460.460
4q73FADBifunctional protein PutA/0.457
4q71FADBifunctional protein PutA/0.454
4eu9COASuccinyl-CoA:acetate CoA-transferase/0.451
4qfzTTPDeoxynucleoside triphosphate triphosphohydrolase SAMHD13.1.50.451
3oetNADErythronate-4-phosphate dehydrogenase/0.448
2r5nTPPTransketolase 1/0.447
1szgFNSCytochrome b2, mitochondrial1.1.2.30.444
4mrm2BYGamma-aminobutyric acid type B receptor subunit 1/0.444
3iocA5DPantothenate synthetase6.3.2.10.443
4g95OAGDihydrofolate reductase1.5.1.30.443
1c9k5GPBifunctional adenosylcobalamin biosynthesis protein CobU/0.442
2b56UTPRNA editing complex protein MP57/0.442
3wqmB29Diterpene synthase3.1.7.80.442
3giyFMN(S)-mandelate dehydrogenase1.1.99.310.441
1u8vFAD4-hydroxybutyryl-CoA dehydratase/vinylacetyl-CoA-Delta-isomerase/0.440
1x1cSAHC-20 methyltransferase/0.440
2cf6NAPCinnamyl alcohol dehydrogenase 51.1.1.1950.440
4zweDGTDeoxynucleoside triphosphate triphosphohydrolase SAMHD13.1.50.440