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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3b8hNADExotoxin A2.4.2.36

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3b8hNADExotoxin A2.4.2.361.000
2zitNADExotoxin A2.4.2.360.603
3b82NADExotoxin A2.4.2.360.574
3b78NADExotoxin A2.4.2.360.560
1xk9P34Exotoxin A2.4.2.360.506
1zm4TADExotoxin A2.4.2.360.497
4pnmNU1Tankyrase-22.4.2.300.479
4tkg09LTankyrase-22.4.2.300.476
4tjy3GNTankyrase-22.4.2.300.473
5dsyUHBPoly [ADP-ribose] polymerase 22.4.2.300.465
4bj9UHBTankyrase-22.4.2.300.463
4bjbP34Tankyrase-22.4.2.300.461
4bjcRPBTankyrase-22.4.2.300.455
1dtpAPUDiphtheria toxin/0.451
4k4eK4ETankyrase-12.4.2.300.447
1ddtAPUDiphtheria toxin/0.446
4pnrG18Tankyrase-22.4.2.300.446