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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3amfFMNFMN-binding protein

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3amfFMNFMN-binding protein/1.000
3a6rFMNFMN-binding protein/0.666
3vy2FMNFMN-binding protein/0.665
2e83FMNFMN-binding protein/0.660
3awhFMNFMN-binding protein/0.645
3a6qFMNFMN-binding protein/0.625
3vy5FMNFMN-binding protein/0.612
1flmFMNFMN-binding protein/0.610
3a20FMNFMN-binding protein/0.593
1wlkFMNFMN-binding protein/0.531
1wliFMNFMN-binding protein/0.528
4eplJAIJasmonic acid-amido synthetase JAR16.3.20.475
3dyqPCGHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.471
1qy5NECEndoplasmin/0.461
2g8yNADHydroxycarboxylate dehydrogenase B/0.456
1dhfFOLDihydrofolate reductase1.5.1.30.455
1a9yUPGUDP-glucose 4-epimerase5.1.3.20.453
1bil0IURenin3.4.23.150.452
1a9zUPGUDP-glucose 4-epimerase5.1.3.20.449
4k5p1OSM1 family aminopeptidase3.4.110.449
4g95OAGDihydrofolate reductase1.5.1.30.447
1xe65FPPlasmepsin-23.4.23.390.446
4gh6LUOHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.446
2b8v3BNBeta-secretase 13.4.23.460.443
1qrpHH0Pepsin A-43.4.23.10.441
2hizLIJBeta-secretase 13.4.23.460.441
3dyqIBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.440