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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2ylsFADPhenylacetone monooxygenase1.14.13.92

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2ylsFADPhenylacetone monooxygenase1.14.13.921.000
2ylrFADPhenylacetone monooxygenase1.14.13.920.649
2ylxFADPhenylacetone monooxygenase1.14.13.920.633
4d03FADPhenylacetone monooxygenase1.14.13.920.624
2ylzFADPhenylacetone monooxygenase1.14.13.920.605
4d04FADPhenylacetone monooxygenase1.14.13.920.603
2yltFADPhenylacetone monooxygenase1.14.13.920.583
2ym2FADPhenylacetone monooxygenase1.14.13.920.583
1w4xFADPhenylacetone monooxygenase1.14.13.920.569
3up4FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase1.14.13.1600.511
3uozFAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase1.14.13.1600.485
4ntdFADThioredoxin reductase/0.463
4u8iFDAUDP-galactopyranose mutase/0.457
2rabFADGlutathione amide reductase/0.454
3kybFADUDP-galactopyranose mutase5.4.99.90.452
3uoyFAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase1.14.13.1600.449
2gh5FADGlutathione reductase, mitochondrial1.8.1.70.446
5br7FADUDP-galactopyranose mutase/0.444
1tehNADAlcohol dehydrogenase class-31.1.1.10.442
3axbFADPutative oxidoreductase/0.441
3up5FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase1.14.13.1600.441