sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 2xc5 | OYJ | Coagulation factor X | 3.4.21.6 |
| PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
|---|---|---|---|---|---|
| 2xc5 | OYJ | Coagulation factor X | 3.4.21.6 | 1.000 | |
| 4btt | VYR | Coagulation factor X | 3.4.21.6 | 0.617 | |
| 2bdy | UNB | Prothrombin | 3.4.21.5 | 0.480 | |
| 1zgv | 501 | Prothrombin | 3.4.21.5 | 0.470 | |
| 3hat | GLY_VAL_ARG_RNG | Prothrombin | 3.4.21.5 | 0.470 | |
| 3wip | ACH | Acetylcholine-binding protein | / | 0.470 | |
| 1c3x | 8IG | Purine nucleoside phosphorylase | 2.4.2.1 | 0.469 | |
| 1pq9 | 44B | Oxysterols receptor LXR-beta | / | 0.468 | |
| 2zhf | 49U | Prothrombin | 3.4.21.5 | 0.457 | |
| 3dyl | IBM | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.457 | |
| 3dyq | IBM | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.457 | |
| 2v3h | I25 | Prothrombin | 3.4.21.5 | 0.455 | |
| 3ivx | FG6 | Pantothenate synthetase | 6.3.2.1 | 0.455 | |
| 2g24 | 7IG | Renin | 3.4.23.15 | 0.452 | |
| 3zei | AWH | O-acetylserine sulfhydrylase | / | 0.452 | |
| 1lf2 | R37 | Plasmepsin-2 | 3.4.23.39 | 0.451 | |
| 1mue | CDD | Prothrombin | 3.4.21.5 | 0.451 | |
| 2g1s | 4IG | Renin | 3.4.23.15 | 0.451 | |
| 3c1k | T15 | Prothrombin | 3.4.21.5 | 0.451 | |
| 2j3q | TFL | Acetylcholinesterase | 3.1.1.7 | 0.450 | |
| 2g1r | 3IG | Renin | 3.4.23.15 | 0.449 | |
| 4a95 | 9MT | Glycylpeptide N-tetradecanoyltransferase | / | 0.449 | |
| 1hku | NAD | C-terminal-binding protein 1 | 1.1.1 | 0.448 | |
| 4arb | C57 | Acetylcholinesterase | 3.1.1.7 | 0.448 | |
| 4imo | PWZ | Prostaglandin-H2 D-isomerase | 5.3.99.2 | 0.448 | |
| 4n82 | FMN | Ribonucleotide reductase (NrdI family protein), putative | / | 0.448 | |
| 1rne | C60 | Renin | 3.4.23.15 | 0.447 | |
| 1d3d | BZT | Prothrombin | 3.4.21.5 | 0.446 | |
| 2fm5 | M99 | cAMP-specific 3',5'-cyclic phosphodiesterase 4D | 3.1.4.53 | 0.446 | |
| 2zju | IM4 | Acetylcholine-binding protein | / | 0.446 | |
| 1d4p | BPP | Prothrombin | 3.4.21.5 | 0.445 | |
| 2fto | CB3 | Thymidylate synthase | / | 0.445 | |
| 3n0h | TOP | Dihydrofolate reductase | 1.5.1.3 | 0.444 | |
| 4ey6 | GNT | Acetylcholinesterase | 3.1.1.7 | 0.444 | |
| 3dux | 64U | Prothrombin | 3.4.21.5 | 0.443 | |
| 2zfr | 46U | Prothrombin | 3.4.21.5 | 0.442 | |
| 3dyn | PCG | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.442 | |
| 1gj5 | 130 | Prothrombin | 3.4.21.5 | 0.441 | |
| 2xby | 63C | Coagulation factor X | 3.4.21.6 | 0.441 | |
| 3l5l | FMN | Xenobiotic reductase | / | 0.440 |