sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 2ogy | C2F | 5-methyltetrahydrofolate:corrinoid/iron-sulfur protein co-methyltransferase | 2.1.1.258 |
| PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
|---|---|---|---|---|---|
| 2ogy | C2F | 5-methyltetrahydrofolate:corrinoid/iron-sulfur protein co-methyltransferase | 2.1.1.258 | 1.000 | |
| 2e7f | C2F | 5-methyltetrahydrofolate:corrinoid/iron-sulfur protein co-methyltransferase | 2.1.1.258 | 0.562 | |
| 2v34 | CTN | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase | / | 0.461 | |
| 2v2q | NVG | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase | / | 0.459 | |
| 4y8w | STR | Steroid 21-hydroxylase | / | 0.458 | |
| 3irm | 1CY | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.456 | |
| 1u33 | LM2 | Pancreatic alpha-amylase | / | 0.455 | |
| 4z0g | 5GP | Inosine-5'-monophosphate dehydrogenase | / | 0.454 | |
| 1dhf | FOL | Dihydrofolate reductase | 1.5.1.3 | 0.453 | |
| 4an4 | DUD | Putative glycosyl transferase | / | 0.453 | |
| 4m49 | 22Y | L-lactate dehydrogenase A chain | 1.1.1.27 | 0.452 | |
| 1n7h | NDP | GDP-mannose 4,6 dehydratase 2 | 4.2.1.47 | 0.451 | |
| 1u30 | GOX | Pancreatic alpha-amylase | / | 0.451 | |
| 1xdd | AAY | Integrin alpha-L | / | 0.451 | |
| 3drc | MTX | Dihydrofolate reductase | 1.5.1.3 | 0.451 | |
| 4opg | FDA | Conserved Archaeal protein | / | 0.450 | |
| 5da9 | AGS | Uncharacterized protein | / | 0.448 | |
| 3b6z | CO7 | Enoyl reductase LovC | 1 | 0.447 | |
| 3t4n | ADP | 5'-AMP-activated protein kinase subunit gamma | / | 0.447 | |
| 2g2z | COZ | Malonyl CoA-acyl carrier protein transacylase | 2.3.1.39 | 0.446 | |
| 2itp | AEE | Epidermal growth factor receptor | 2.7.10.1 | 0.446 | |
| 4ozt | P1A | Ecdysone receptor, putative | / | 0.446 | |
| 4q73 | FAD | Bifunctional protein PutA | / | 0.446 | |
| 1rb3 | MTX | Dihydrofolate reductase | 1.5.1.3 | 0.445 | |
| 2ejv | NAD | L-threonine 3-dehydrogenase | / | 0.445 | |
| 4py2 | 43E | Methionine--tRNA ligase | / | 0.445 | |
| 5dp2 | NAP | CurF | / | 0.445 | |
| 1c1d | NAI | Phenylalanine dehydrogenase | / | 0.444 | |
| 4hy6 | FJ1 | Heat shock protein HSP 90-alpha | / | 0.444 | |
| 4kl9 | NDP | Dihydrofolate reductase | 1.5.1.3 | 0.444 | |
| 1dg8 | NDP | Dihydrofolate reductase | 1.5.1.3 | 0.443 | |
| 4emd | C5P | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase | / | 0.443 | |
| 4wji | NAP | Putative cyclohexadienyl dehydrogenase and ADH prephenate dehydrogenase | / | 0.443 | |
| 4epl | JAI | Jasmonic acid-amido synthetase JAR1 | 6.3.2 | 0.442 | |
| 4nxx | GDP | Mitochondrial dynamics protein MID51 | / | 0.442 | |
| 4zo3 | C6L | Acylhomoserine lactonase | / | 0.442 | |
| 1ju9 | NAD | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.441 | |
| 1k6c | MK1 | Gag-Pol polyprotein | 3.4.23.16 | 0.441 | |
| 2f7x | 4EA | cAMP-dependent protein kinase catalytic subunit alpha | 2.7.11.11 | 0.440 |