1.670 Å
X-ray
2015-05-05
| Name: | Acylhomoserine lactonase |
|---|---|
| ID: | I7HB71_9FLAO |
| AC: | I7HB71 |
| Organism: | Chryseobacterium sp. StRB126 |
| Reign: | Bacteria |
| TaxID: | 878220 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 18.474 |
|---|---|
| Number of residues: | 29 |
| Including | |
| Standard Amino Acids: | 26 |
| Non Standard Amino Acids: | 2 |
| Water Molecules: | 1 |
| Cofactors: | |
| Metals: | ZN ZN |
| Ligandability | Volume (Å3) |
|---|---|
| 0.105 | 590.625 |
| % Hydrophobic | % Polar |
|---|---|
| 47.43 | 52.57 |
| According to VolSite | |

| HET Code: | C6L |
|---|---|
| Formula: | C10H18NO4 |
| Molecular weight: | 216.254 g/mol |
| DrugBank ID: | DB07532 |
| Buried Surface Area: | 62.51 % |
| Polar Surface area: | 89.46 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 4 |
| H-Bond Donors: | 2 |
| Rings: | 0 |
| Aromatic rings: | 0 |
| Anionic atoms: | 1 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 8 |
| X | Y | Z |
|---|---|---|
| 7.95713 | -0.926267 | -55.2351 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C1 | CD1 | ILE- 60 | 4.25 | 0 | Hydrophobic |
| C6 | CB | HIS- 147 | 4.46 | 0 | Hydrophobic |
| N1 | OD1 | ASP- 149 | 3.18 | 127.54 | H-Bond (Ligand Donor) |
| C10 | CH2 | TRP- 178 | 3.69 | 0 | Hydrophobic |
| C9 | CD1 | LEU- 191 | 3.96 | 0 | Hydrophobic |
| C10 | CD2 | LEU- 198 | 3.64 | 0 | Hydrophobic |
| C10 | CG2 | ILE- 201 | 3.6 | 0 | Hydrophobic |
| O2 | NE2 | HIS- 261 | 3.5 | 137.49 | H-Bond (Protein Donor) |
| O1 | NE2 | HIS- 261 | 2.8 | 133.89 | H-Bond (Protein Donor) |
| C2 | CZ | PHE- 274 | 3.5 | 0 | Hydrophobic |
| O2 | ZN | ZN- 401 | 2.52 | 0 | Metal Acceptor |
| O1 | ZN | ZN- 402 | 2.42 | 0 | Metal Acceptor |