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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2oadGTBGlutathione S-transferase P 12.5.1.18

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2oadGTBGlutathione S-transferase P 12.5.1.181.000
2a2sGSNGlutathione S-transferase P2.5.1.180.642
1gtiGTBGlutathione S-transferase P 12.5.1.180.638
2glrGTXGlutathione S-transferase P 12.5.1.180.629
13gsSASGlutathione S-transferase P2.5.1.180.626
2oa7GTXGlutathione S-transferase P 12.5.1.180.626
2j9hGTXGlutathione S-transferase P2.5.1.180.606
1aqxGTDGlutathione S-transferase P2.5.1.180.603
12gs0HHGlutathione S-transferase P2.5.1.180.598
1pgtGTXGlutathione S-transferase P2.5.1.180.598
4pgtGBXGlutathione S-transferase P2.5.1.180.586
3gusN11Glutathione S-transferase P2.5.1.180.579
3ie3N11Glutathione S-transferase P2.5.1.180.575
9gssGTXGlutathione S-transferase P2.5.1.180.574
3pgtGBXGlutathione S-transferase P2.5.1.180.562
20gsCBDGlutathione S-transferase P2.5.1.180.551
1gssLEEGlutathione S-transferase P2.5.1.180.536
3csjCBLGlutathione S-transferase P2.5.1.180.512
2pgtGPRGlutathione S-transferase P2.5.1.180.504
3o76GTBGlutathione S-transferase P 12.5.1.180.479
2vd0D27Hematopoietic prostaglandin D synthase/0.471
3e32ED2Protein farnesyltransferase subunit beta2.5.1.580.456
1aqv0HGGlutathione S-transferase P2.5.1.180.453
1qbqHFPProtein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha/0.450
1qbqHFPProtein farnesyltransferase subunit beta2.5.1.580.450
4j7hTRHPCZA361.3/0.448
2vcwZZAHematopoietic prostaglandin D synthase/0.446
2vqbNAPPutative flavin-containing monooxygenase/0.446
1sa4JANProtein farnesyltransferase subunit beta2.5.1.580.440