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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2gcqDOIAdenylosuccinate synthetase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2gcqDOIAdenylosuccinate synthetase/1.000
1nhtPGSAdenylosuccinate synthetase/0.556
1cg4IMOAdenylosuccinate synthetase/0.546
1kszPGSAdenylosuccinate synthetase/0.545
1cg1IMOAdenylosuccinate synthetase/0.544
1cg0IMOAdenylosuccinate synthetase/0.522
1qf4RPDAdenylosuccinate synthetase/0.517
1cg3IMOAdenylosuccinate synthetase/0.489
1lonIMOAdenylosuccinate synthetase isozyme 1/0.481
1p9bIMOAdenylosuccinate synthetase/0.479
1qf5RPLAdenylosuccinate synthetase/0.479
2dgnDOIAdenylosuccinate synthetase isozyme 1/0.465
1yb5NAPQuinone oxidoreductase1.6.5.50.449