sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 2fjd | SFD | Adenylylsulfate reductase, subunit A (AprA) |
| PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
|---|---|---|---|---|---|
| 2fjd | SFD | Adenylylsulfate reductase, subunit A (AprA) | / | 1.000 | |
| 2fjb | SFD | Adenylylsulfate reductase, subunit A (AprA) | / | 0.827 | |
| 2fja | FAD | Adenylylsulfate reductase, subunit A (AprA) | / | 0.607 | |
| 1jnz | FAD | Adenylylsulfate reductase, subunit A (AprA) | / | 0.581 | |
| 1jnr | FAD | Adenylylsulfate reductase, subunit A (AprA) | / | 0.570 | |
| 2xlr | FAD | Putative flavin-containing monooxygenase | / | 0.478 | |
| 1ps9 | MDE | 2,4-dienoyl-CoA reductase | 1.3.1.34 | 0.470 | |
| 1v0j | FAD | UDP-galactopyranose mutase | 5.4.99.9 | 0.466 | |
| 2bac | FAD | Putative aminooxidase | / | 0.462 | |
| 2zu9 | GDP | Mannosyl-3-phosphoglycerate synthase | 2.4.1.217 | 0.462 | |
| 1c3x | 8IG | Purine nucleoside phosphorylase | 2.4.2.1 | 0.460 | |
| 3bg7 | FAD | Pyranose 2-oxidase | / | 0.459 | |
| 1lbc | CYZ | Glutamate receptor 2 | / | 0.457 | |
| 3r9u | FAD | Thioredoxin reductase | / | 0.456 | |
| 1knr | FAD | L-aspartate oxidase | 1.4.3.16 | 0.455 | |
| 3mau | EXT | Putative sphingosine-1-phosphate lyase | / | 0.453 | |
| 2zse | ACP | Pantothenate kinase | 2.7.1.33 | 0.451 | |
| 4at0 | FAD | Possible succinate dehydrogenase | / | 0.451 | |
| 1iol | EST | Estradiol 17-beta-dehydrogenase 1 | 1.1.1.62 | 0.448 | |
| 2geu | COK | Pantothenate kinase | 2.7.1.33 | 0.448 | |
| 4kwh | NAP | Reductase homolog | / | 0.448 | |
| 1qor | NDP | Quinone oxidoreductase 1 | / | 0.446 | |
| 1h63 | FMN | Pentaerythritol tetranitrate reductase | / | 0.445 | |
| 1qo8 | FAD | Fumarate reductase flavoprotein subunit | / | 0.445 | |
| 2cmj | NAP | Isocitrate dehydrogenase [NADP] cytoplasmic | 1.1.1.42 | 0.445 | |
| 1h50 | FMN | Pentaerythritol tetranitrate reductase | / | 0.444 | |
| 4ewn | 0VR | Imidazole glycerol phosphate synthase subunit HisF | 4.1.3 | 0.442 | |
| 1nyt | NAP | Shikimate dehydrogenase (NADP(+)) | / | 0.441 | |
| 2fto | CB3 | Thymidylate synthase | / | 0.441 | |
| 3kyb | FAD | UDP-galactopyranose mutase | 5.4.99.9 | 0.440 | |
| 4h3j | 10W | Beta-secretase 1 | 3.4.23.46 | 0.440 | |
| 5dp2 | NAP | CurF | / | 0.440 |