sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Distribution of Cavity similarities measured by Shaper

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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
2fah	GDP	Phosphoenolpyruvate carboxykinase [GTP], mitochondrial	4.1.1.32

Complex with similar cavities

PDB ID	HET	Uniprot Name	EC Number	Cavity Similarity	Align
2fah	GDP	Phosphoenolpyruvate carboxykinase [GTP], mitochondrial	4.1.1.32	1.000
3dt2	GTP	Phosphoenolpyruvate carboxykinase, cytosolic [GTP]	4.1.1.32	0.594
3dt4	GTP	Phosphoenolpyruvate carboxykinase, cytosolic [GTP]	4.1.1.32	0.582
2qf2	GDP	Phosphoenolpyruvate carboxykinase, cytosolic [GTP]	4.1.1.32	0.565
1m51	TSX	Phosphoenolpyruvate carboxykinase, cytosolic [GTP]	4.1.1.32	0.465
2q7o	IMH	Purine nucleoside phosphorylase	2.4.2.1	0.465
1khe	GCP	Phosphoenolpyruvate carboxykinase, cytosolic [GTP]	4.1.1.32	0.463
3moh	GDP	Phosphoenolpyruvate carboxykinase, cytosolic [GTP]	4.1.1.32	0.458
4ara	C56	Acetylcholinesterase	3.1.1.7	0.455
1q84	TZ4	Acetylcholinesterase	3.1.1.7	0.451
2whq	HI6	Acetylcholinesterase	3.1.1.7	0.451
4m0f	1YK	Acetylcholinesterase	3.1.1.7	0.449
2xup	TZ5	Acetylcholinesterase	3.1.1.7	0.444
2pid	YSA	Tyrosine--tRNA ligase, mitochondrial	6.1.1.1	0.443
4b4v	L34	Bifunctional protein FolD	/	0.443