sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Distribution of Cavity similarities measured by Shaper

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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
2bfp	H4B	Pteridine reductase 1	1.5.1.33

Complex with similar cavities

PDB ID	HET	Uniprot Name	EC Number	Cavity Similarity	Align
2bfp	H4B	Pteridine reductase 1	1.5.1.33	1.000
1e92	HBI	Pteridine reductase 1	1.5.1.33	0.851
2bf7	HBI	Pteridine reductase 1	1.5.1.33	0.697
3h4v	DVP	Pteridine reductase 1	1.5.1.33	0.659
2qhx	FE1	Pteridine reductase 1	1.5.1.33	0.651
2bfa	CB3	Pteridine reductase 1	1.5.1.33	0.629
2bfm	TOP	Pteridine reductase 1	1.5.1.33	0.606
3h4v	NAP	Pteridine reductase 1	1.5.1.33	0.564
1p33	MTX	Pteridine reductase 1	1.5.1.33	0.478
1e7w	MTX	Pteridine reductase 1	1.5.1.33	0.476
1v7a	FRC	Adenosine deaminase	3.5.4.4	0.461
2z7g	EH9	Adenosine deaminase	3.5.4.4	0.448
1mxf	MTX	Putative pteridine reductase 2	/	0.447
1o5r	FR9	Adenosine deaminase	3.5.4.4	0.441