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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2bbf344Queuine tRNA-ribosyltransferase2.4.2.29

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2bbf344Queuine tRNA-ribosyltransferase2.4.2.291.000
1efzPRFQueuine tRNA-ribosyltransferase2.4.2.290.638
2qzrS79Queuine tRNA-ribosyltransferase2.4.2.290.616
2z1xPRFQueuine tRNA-ribosyltransferase2.4.2.290.615
4hshQEIQueuine tRNA-ribosyltransferase2.4.2.290.611
1k4hAPQQueuine tRNA-ribosyltransferase2.4.2.290.581
2potGUNQueuine tRNA-ribosyltransferase2.4.2.290.581
1ozqPRFQueuine tRNA-ribosyltransferase2.4.2.290.569
1y5wNEZQueuine tRNA-ribosyltransferase2.4.2.290.566
1y5xE89Queuine tRNA-ribosyltransferase2.4.2.290.566
1q63AIQQueuine tRNA-ribosyltransferase2.4.2.290.562
1q4wDQUQueuine tRNA-ribosyltransferase2.4.2.290.555
1n2vBDIQueuine tRNA-ribosyltransferase2.4.2.290.554
3gc4AAQQueuine tRNA-ribosyltransferase2.4.2.290.546
4gh10WXQueuine tRNA-ribosyltransferase2.4.2.290.546
4gcxPRFQueuine tRNA-ribosyltransferase2.4.2.290.539
1q66KMBQueuine tRNA-ribosyltransferase2.4.2.290.535
3gc52MQQueuine tRNA-ribosyltransferase2.4.2.290.535
1p0ePRFQueuine tRNA-ribosyltransferase2.4.2.290.533
4gh30EVQueuine tRNA-ribosyltransferase2.4.2.290.531
3ge7AFQQueuine tRNA-ribosyltransferase2.4.2.290.526
4hqvQEIQueuine tRNA-ribosyltransferase2.4.2.290.524
4fr10V2Queuine tRNA-ribosyltransferase2.4.2.290.523
4q8pCKRQueuine tRNA-ribosyltransferase2.4.2.290.520
4giy0WYQueuine tRNA-ribosyltransferase2.4.2.290.517
2z1wBDIQueuine tRNA-ribosyltransferase2.4.2.290.513
1f3eDPZQueuine tRNA-ribosyltransferase2.4.2.290.511
1y5vNE8Queuine tRNA-ribosyltransferase2.4.2.290.506
4hvxQEIQueuine tRNA-ribosyltransferase2.4.2.290.505
1k4gAIQQueuine tRNA-ribosyltransferase2.4.2.290.501
4gi40EXQueuine tRNA-ribosyltransferase2.4.2.290.501
3sm0AEKQueuine tRNA-ribosyltransferase2.4.2.290.488
4gg90WWQueuine tRNA-ribosyltransferase2.4.2.290.487
4h7zGUNQueuine tRNA-ribosyltransferase2.4.2.290.487
4fps0UXQueuine tRNA-ribosyltransferase2.4.2.290.483
4gkt0O1Queuine tRNA-ribosyltransferase2.4.2.290.478
3bllBPQQueuine tRNA-ribosyltransferase2.4.2.290.477
4fsa0V3Queuine tRNA-ribosyltransferase2.4.2.290.466
1hfqMOTDihydrofolate reductase1.5.1.30.462
2wd8VGFPteridine reductase/0.451
3t4eNADQuinate/shikimate dehydrogenase/0.450
2z1qFADAcyl-CoA dehydrogenase/0.440