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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1z9aNADNAD(P)H-dependent D-xylose reductase1.1.1.307

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1z9aNADNAD(P)H-dependent D-xylose reductase1.1.1.3071.000
1sm9NADNAD(P)H-dependent D-xylose reductase1.1.1.3070.624
1mi3NADNAD(P)H-dependent D-xylose reductase1.1.1.3070.602
1ye4NADNAD(P)H-dependent D-xylose reductase1.1.1.3070.594
1k8cNAPNAD(P)H-dependent D-xylose reductase1.1.1.3070.575
1ye6NADNAD(P)H-dependent D-xylose reductase1.1.1.3070.563
1r38NAPNAD(P)H-dependent D-xylose reductase1.1.1.3070.526