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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1yobFMNFlavodoxin 2

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1yobFMNFlavodoxin 2/1.000
4h2dFMNNADPH-dependent diflavin oxidoreductase 1/0.478
1ykgFMNSulfite reductase [NADPH] flavoprotein alpha-component/0.473
1fueFMNFlavodoxin/0.471
2v5vFMNFlavodoxin/0.464
2ylxFADPhenylacetone monooxygenase1.14.13.920.464
2w5uFMNFlavodoxin/0.463
2z4w749Geranylgeranyl pyrophosphate synthase/0.455
4y7cFMNNADPH--cytochrome P450 reductase/0.453
2op07PCEnoyl-ACP reductase/0.451
3cgtBCDCyclomaltodextrin glucanotransferase2.4.1.190.448
4fhd0TTSpore photoproduct lyase/0.448
3ojxFMNNADPH--cytochrome P450 reductase/0.443
4bftZVTPantothenate kinase2.7.1.330.443
4pnmNU1Tankyrase-22.4.2.300.443
1akwFMNFlavodoxin/0.442
5ab6CAANonspecific lipid-transfer protein, putative/0.442
3uaxNOSPurine nucleoside phosphorylase DeoD-type/0.440
5dp2NAPCurF/0.440