sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 1ya3 | STR | Mineralocorticoid receptor |
| PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
|---|---|---|---|---|---|
| 1ya3 | STR | Mineralocorticoid receptor | / | 1.000 | |
| 1zuc | T98 | Progesterone receptor | / | 0.584 | |
| 4udc | DEX | Glucocorticoid receptor | / | 0.572 | |
| 1p93 | DEX | Glucocorticoid receptor | / | 0.565 | |
| 4p6x | HCY | Glucocorticoid receptor | / | 0.538 | |
| 1sr7 | MOF | Progesterone receptor | / | 0.528 | |
| 2ovm | AS0 | Progesterone receptor | / | 0.516 | |
| 2oax | SNL | Mineralocorticoid receptor | / | 0.492 | |
| 2aax | PDN | Mineralocorticoid receptor | / | 0.489 | |
| 2a3i | C0R | Mineralocorticoid receptor | / | 0.481 | |
| 3bqd | DAY | Glucocorticoid receptor | / | 0.475 | |
| 2aa6 | STR | Mineralocorticoid receptor | / | 0.473 | |
| 2w8y | NDR | Progesterone receptor | / | 0.471 | |
| 3zrb | ORC | Progesterone receptor | / | 0.470 | |
| 4p6w | MOF | Glucocorticoid receptor | / | 0.468 | |
| 4uda | DEX | Mineralocorticoid receptor | / | 0.468 | |
| 2ab2 | SNL | Mineralocorticoid receptor | / | 0.467 | |
| 1iol | EST | Estradiol 17-beta-dehydrogenase 1 | 1.1.1.62 | 0.465 | |
| 3zoi | M2W | Isopenicillin N synthase | 1.21.3.1 | 0.465 | |
| 1bk0 | ACV | Isopenicillin N synthase | 1.21.3.1 | 0.464 | |
| 1hb1 | OCV | Isopenicillin N synthase | 1.21.3.1 | 0.464 | |
| 2w8y | 486 | Progesterone receptor | / | 0.464 | |
| 3vhu | SNL | Mineralocorticoid receptor | / | 0.464 | |
| 4a2j | AS0 | Progesterone receptor | / | 0.463 | |
| 2abi | 1CA | Mineralocorticoid receptor | / | 0.462 | |
| 3zky | WT4 | Isopenicillin N synthase | 1.21.3.1 | 0.461 | |
| 4apu | OR8 | Progesterone receptor | / | 0.460 | |
| 2aa5 | STR | Mineralocorticoid receptor | / | 0.459 | |
| 2jb4 | A14 | Isopenicillin N synthase | 1.21.3.1 | 0.459 | |
| 2he5 | NDP | Aldo-keto reductase family 1 member C21 | 1.1.1 | 0.458 | |
| 3zr7 | OR8 | Progesterone receptor | / | 0.458 | |
| 2hm9 | TRR | Dihydrofolate reductase | 1.5.1.3 | 0.457 | |
| 3had | NAD | Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial | 1.1.1.35 | 0.456 | |
| 3qls | NDP | Dihydrofolate reductase | 1.5.1.3 | 0.456 | |
| 4bb3 | KKA | Isopenicillin N synthase | 1.21.3.1 | 0.456 | |
| 4do3 | 0LA | Fatty-acid amide hydrolase 1 | 3.5.1.99 | 0.456 | |
| 4xld | BRL | Peroxisome proliferator-activated receptor gamma | / | 0.456 | |
| 1hb3 | SCV | Isopenicillin N synthase | 1.21.3.1 | 0.455 | |
| 2aa7 | 1CA | Mineralocorticoid receptor | / | 0.454 | |
| 2y60 | M8F | Isopenicillin N synthase | 1.21.3.1 | 0.454 | |
| 2ym1 | FAD | Phenylacetone monooxygenase | 1.14.13.92 | 0.454 | |
| 3dtc | VIN | Mitogen-activated protein kinase kinase kinase 9 | 2.7.11.25 | 0.454 | |
| 2ivi | ACW | Isopenicillin N synthase | 1.21.3.1 | 0.453 | |
| 4hxy | NDP | Plm1 | / | 0.453 | |
| 1tj0 | FAD | Bifunctional protein PutA | 1.5.5.2 | 0.452 | |
| 2aa2 | AS4 | Mineralocorticoid receptor | / | 0.452 | |
| 2i4j | DRJ | Peroxisome proliferator-activated receptor gamma | / | 0.452 | |
| 4iwc | 1GV | Estrogen receptor | / | 0.452 | |
| 1osv | CHC | Bile acid receptor | / | 0.451 | |
| 3em0 | CHD | Fatty acid-binding protein 6, ileal (gastrotropin) | / | 0.451 | |
| 3zrb | OR8 | Progesterone receptor | / | 0.451 | |
| 1f0l | APU | Diphtheria toxin | / | 0.450 | |
| 1uzw | CDH | Isopenicillin N synthase | 1.21.3.1 | 0.450 | |
| 1y9r | 1CA | Mineralocorticoid receptor | / | 0.450 | |
| 2fw3 | BUI | Carnitine O-palmitoyltransferase 2, mitochondrial | 2.3.1.21 | 0.450 | |
| 2vbd | V10 | Isopenicillin N synthase | 1.21.3.1 | 0.450 | |
| 4a81 | DXC | Major pollen allergen Bet v 1-A | / | 0.450 | |
| 4c8b | 0LI | Receptor-interacting serine/threonine-protein kinase 2 | 2.7.11.1 | 0.450 | |
| 4qi5 | FAD | Cellobiose dehydrogenase | / | 0.450 | |
| 2piw | DHT | Androgen receptor | / | 0.449 | |
| 1i7i | AZ2 | Peroxisome proliferator-activated receptor gamma | / | 0.448 | |
| 1lso | NAD | Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial | 1.1.1.35 | 0.448 | |
| 1w06 | W05 | Isopenicillin N synthase | 1.21.3.1 | 0.448 | |
| 2qpy | DHT | Androgen receptor | / | 0.448 | |
| 3ibd | CPZ | Cytochrome P450 2B6 | 1.14.13 | 0.448 | |
| 3h1v | TK1 | Glucokinase | 2.7.1.2 | 0.447 | |
| 3hub | 469 | Mitogen-activated protein kinase 14 | / | 0.447 | |
| 4eph | 0RK | Carnitine O-palmitoyltransferase 2, mitochondrial | 2.3.1.21 | 0.447 | |
| 4hee | 14R | Peroxisome proliferator-activated receptor gamma | / | 0.447 | |
| 4ktl | 1CQ | Cytochrome P450 | / | 0.447 | |
| 1u0h | ONM | Adenylate cyclase type 2 | / | 0.446 | |
| 1u0h | ONM | Adenylate cyclase type 5 | / | 0.446 | |
| 2q9f | C3S | Cholesterol 24-hydroxylase | / | 0.446 | |
| 4bf2 | STU | Mitogen-activated protein kinase kinase kinase 5 | 2.7.11.25 | 0.446 | |
| 2ovh | AS0 | Progesterone receptor | / | 0.445 | |
| 4ktf | 1TM | Cytochrome P450 | / | 0.445 | |
| 4bfu | ZVU | Pantothenate kinase | 2.7.1.33 | 0.444 | |
| 4ktk | KTK | Cytochrome P450 | / | 0.444 | |
| 4wdb | 2AM | 2',3'-cyclic-nucleotide 3'-phosphodiesterase | 3.1.4.37 | 0.444 | |
| 5lc1 | NAD | L-threonine 3-dehydrogenase | / | 0.444 | |
| 1hrv | SDZ | Genome polyprotein | / | 0.443 | |
| 1j3k | NDP | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.443 | |
| 2i4p | DRH | Peroxisome proliferator-activated receptor gamma | / | 0.443 | |
| 1iep | STI | Tyrosine-protein kinase ABL1 | 2.7.10.2 | 0.442 | |
| 1lsj | NAD | Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial | 1.1.1.35 | 0.442 | |
| 1m2z | DEX | Glucocorticoid receptor | / | 0.442 | |
| 2h2q | NAP | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.442 | |
| 3e2s | FAD | Bifunctional protein PutA | 1.5.5.2 | 0.442 | |
| 4pd6 | URI | Nucleoside permease | / | 0.442 | |
| 4ruo | BIV | Vitamin D3 receptor A | / | 0.442 | |
| 4wda | 2AM | 2',3'-cyclic-nucleotide 3'-phosphodiesterase | 3.1.4.37 | 0.442 | |
| 1oc1 | ASV | Isopenicillin N synthase | 1.21.3.1 | 0.441 | |
| 2gfs | PQB | Mitogen-activated protein kinase 14 | / | 0.441 | |
| 3a3y | OBN | Sodium/potassium-transporting ATPase subunit alpha | / | 0.441 | |
| 3bfa | 9OD | Odorant binding protein ASP1 | / | 0.441 | |
| 3wle | NAD | (R)-specific carbonyl reductase | / | 0.440 | |
| 4lsj | LSJ | Glucocorticoid receptor | / | 0.440 |