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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1y5wNEZQueuine tRNA-ribosyltransferase2.4.2.29

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1y5wNEZQueuine tRNA-ribosyltransferase2.4.2.291.000
2z1xPRFQueuine tRNA-ribosyltransferase2.4.2.290.599
4fsa0V3Queuine tRNA-ribosyltransferase2.4.2.290.587
4gi40EXQueuine tRNA-ribosyltransferase2.4.2.290.567
1q4wDQUQueuine tRNA-ribosyltransferase2.4.2.290.560
2bbf344Queuine tRNA-ribosyltransferase2.4.2.290.555
4q8pCKRQueuine tRNA-ribosyltransferase2.4.2.290.554
2potGUNQueuine tRNA-ribosyltransferase2.4.2.290.551
4gkt0O1Queuine tRNA-ribosyltransferase2.4.2.290.550
3gc4AAQQueuine tRNA-ribosyltransferase2.4.2.290.546
4fps0UXQueuine tRNA-ribosyltransferase2.4.2.290.545
2qzrS79Queuine tRNA-ribosyltransferase2.4.2.290.544
4gg90WWQueuine tRNA-ribosyltransferase2.4.2.290.537
3ge7AFQQueuine tRNA-ribosyltransferase2.4.2.290.532
4gh10WXQueuine tRNA-ribosyltransferase2.4.2.290.527
1p0ePRFQueuine tRNA-ribosyltransferase2.4.2.290.522
1y5xE89Queuine tRNA-ribosyltransferase2.4.2.290.517
4fr10V2Queuine tRNA-ribosyltransferase2.4.2.290.509
1ozqPRFQueuine tRNA-ribosyltransferase2.4.2.290.508
4gcxPRFQueuine tRNA-ribosyltransferase2.4.2.290.505
1y5vNE8Queuine tRNA-ribosyltransferase2.4.2.290.504
1efzPRFQueuine tRNA-ribosyltransferase2.4.2.290.503
4gh30EVQueuine tRNA-ribosyltransferase2.4.2.290.500
4giy0WYQueuine tRNA-ribosyltransferase2.4.2.290.491
3sm0AEKQueuine tRNA-ribosyltransferase2.4.2.290.489
1q63AIQQueuine tRNA-ribosyltransferase2.4.2.290.482
1q66KMBQueuine tRNA-ribosyltransferase2.4.2.290.481
4hqvQEIQueuine tRNA-ribosyltransferase2.4.2.290.471
1f3eDPZQueuine tRNA-ribosyltransferase2.4.2.290.470
1k4hAPQQueuine tRNA-ribosyltransferase2.4.2.290.464
1k4gAIQQueuine tRNA-ribosyltransferase2.4.2.290.455
2z1wBDIQueuine tRNA-ribosyltransferase2.4.2.290.455
3sn6P0GBeta-2 adrenergic receptor/0.452
2pwuGUNQueuine tRNA-ribosyltransferase2.4.2.290.451
1n2vBDIQueuine tRNA-ribosyltransferase2.4.2.290.447
3gc52MQQueuine tRNA-ribosyltransferase2.4.2.290.444
3bllBPQQueuine tRNA-ribosyltransferase2.4.2.290.442