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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1xpqFADPolyamine oxidase FMS1

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1xpqFADPolyamine oxidase FMS1/1.000
3cn8FADPolyamine oxidase FMS1/0.590
3cndFADPolyamine oxidase FMS1/0.582
4echFADPolyamine oxidase FMS1/0.578
3cntFADPolyamine oxidase FMS1/0.546
5l3dFADLysine-specific histone demethylase 1A10.534
4fwjFADLysine-specific histone demethylase 1B10.502
2uxxFAJLysine-specific histone demethylase 1A10.498
2iw5FADLysine-specific histone demethylase 1A10.491
3k7tFAD6-hydroxy-L-nicotine oxidase/0.485
2yg7FADPutrescine oxidase/0.473
3kpfFADPolyamine oxidase1.5.3.140.473
4i58FADCyclohexylamine Oxidase/0.468
2bacFADPutative aminooxidase/0.467
1h81FADPolyamine oxidase1.5.3.140.463
1sezFADProtoporphyrinogen oxidase, mitochondrial1.3.3.40.459
2babFADPutative aminooxidase/0.459
3rhaFDAPutrescine oxidase/0.457
5g3tFDAFlavin-dependent L-tryptophan oxidase VioA/0.456
3zdnFADMonoamine oxidase N1.4.3.40.455
2b9xFADPutative aminooxidase/0.454
2ba9FADPutative aminooxidase/0.454
5g3sFDAFlavin-dependent L-tryptophan oxidase VioA/0.452
1f8rFADL-amino-acid oxidase1.4.3.20.447
2yg4FADPutrescine oxidase/0.446
2b9yFADPutative aminooxidase/0.443