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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1ve9FADD-amino-acid oxidase1.4.3.3

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1ve9FADD-amino-acid oxidase1.4.3.31.000
4yjdFADD-amino-acid oxidase1.4.3.30.590
1kifFADD-amino-acid oxidase1.4.3.30.566
2du8FADD-amino-acid oxidase1.4.3.30.542
3axbFADPutative oxidoreductase/0.523
4yshFADGlycine oxidase/0.502
1ryiFADGlycine oxidase1.4.3.190.484
1w4xFADPhenylacetone monooxygenase1.14.13.920.461
1ng3FADGlycine oxidase1.4.3.190.455
4d04FADPhenylacetone monooxygenase1.14.13.920.450
3if9FADGlycine oxidase1.4.3.190.448
4mo2FDAUDP-galactopyranose mutase/0.448
3m13FADMonomeric sarcosine oxidase1.5.3.10.446
2ylzFADPhenylacetone monooxygenase1.14.13.920.444
3uozFAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase1.14.13.1600.443
4h4yFADBiphenyl dioxygenase ferredoxin reductase subunit/0.441