scPDB - Distribution of Cavity Similarity values of 1vaf entry / Site 1

Distribution of Cavity similarities measured by Shaper

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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
1vaf	H4B	Nitric oxide synthase, inducible	1.14.13.39

Complex with similar cavities

PDB ID	HET	Uniprot Name	EC Number	Cavity Similarity
1vaf	H4B	Nitric oxide synthase, inducible	1.14.13.39	1.000
1r35	H4B	Nitric oxide synthase, inducible	1.14.13.39	0.599
1qw5	H4B	Nitric oxide synthase, inducible	1.14.13.39	0.594
3dwj	H4B	Nitric oxide synthase, inducible	1.14.13.39	0.582
3e67	H4B	Nitric oxide synthase, inducible	1.14.13.39	0.579
4jsg	H4B	Nitric oxide synthase, brain	1.14.13.39	0.574
1qom	H4B	Nitric oxide synthase, inducible	1.14.13.39	0.565
4k5e	H4B	Nitric oxide synthase, brain	1.14.13.39	0.560
3b3m	H4B	Nitric oxide synthase, brain	1.14.13.39	0.548
3ufr	H4B	Nitric oxide synthase, brain	1.14.13.39	0.547
3nnz	H4B	Nitric oxide synthase, brain	1.14.13.39	0.545
4fvz	H4B	Nitric oxide synthase, brain	1.14.13.39	0.542
3e6o	H4B	Nitric oxide synthase, inducible	1.14.13.39	0.540
3b3p	H4B	Nitric oxide synthase, brain	1.14.13.39	0.539
3n5z	H4B	Nitric oxide synthase, brain	1.14.13.39	0.532
4imt	H4B	Nitric oxide synthase, brain	1.14.13.39	0.531
1p6j	H4B	Nitric oxide synthase, brain	1.14.13.39	0.529
3tym	H4B	Nitric oxide synthase, brain	1.14.13.39	0.529
5agl	H4B	Nitric oxide synthase, brain	1.14.13.39	0.529
1rs6	H4B	Nitric oxide synthase, brain	1.14.13.39	0.528
3e6t	H4B	Nitric oxide synthase, inducible	1.14.13.39	0.528
1m8i	H4B	Nitric oxide synthase, inducible	1.14.13.39	0.526
4k5d	H4B	Nitric oxide synthase, brain	1.14.13.39	0.525
1zzu	H4B	Nitric oxide synthase, brain	1.14.13.39	0.524
3ej8	H4B	Nitric oxide synthase, inducible	1.14.13.39	0.521
3nny	H4B	Nitric oxide synthase, brain	1.14.13.39	0.520
3jx4	H4B	Nitric oxide synthase, brain	1.14.13.39	0.518
4gqe	H4B	Nitric oxide synthase, brain	1.14.13.39	0.518
3nln	H4B	Nitric oxide synthase, brain	1.14.13.39	0.517
3nly	H4B	Nitric oxide synthase, brain	1.14.13.39	0.517
3png	H4B	Nitric oxide synthase, brain	1.14.13.39	0.517
4k5f	H4B	Nitric oxide synthase, brain	1.14.13.39	0.514
2nod	H4B	Nitric oxide synthase, inducible	1.14.13.39	0.513
3ufo	H4B	Nitric oxide synthase, brain	1.14.13.39	0.513
4imw	H4B	Nitric oxide synthase, brain	1.14.13.39	0.513
1zzq	H4B	Nitric oxide synthase, brain	1.14.13.39	0.510
3nlv	H4B	Nitric oxide synthase, brain	1.14.13.39	0.509
4eux	H4B	Nitric oxide synthase, brain	1.14.13.39	0.509
3ufq	H4B	Nitric oxide synthase, brain	1.14.13.39	0.508
1k2u	H4B	Nitric oxide synthase, brain	1.14.13.39	0.507
3n5v	H4B	Nitric oxide synthase, brain	1.14.13.39	0.507
3b3o	H4B	Nitric oxide synthase, brain	1.14.13.39	0.505
3pne	H4B	Nitric oxide synthase, brain	1.14.13.39	0.505
2y37	H4B	Nitric oxide synthase, inducible	1.14.13.39	0.504
4imu	H4B	Nitric oxide synthase, brain	1.14.13.39	0.504
3nlw	H4B	Nitric oxide synthase, brain	1.14.13.39	0.503
1k2t	H4B	Nitric oxide synthase, brain	1.14.13.39	0.499
2hx3	H4B	Nitric oxide synthase, brain	1.14.13.39	0.499
3b3n	H4B	Nitric oxide synthase, brain	1.14.13.39	0.499
3ufp	H4B	Nitric oxide synthase, brain	1.14.13.39	0.498
4jsf	H4B	Nitric oxide synthase, brain	1.14.13.39	0.498
1m00	H4B	Nitric oxide synthase, brain	1.14.13.39	0.496
3nlp	H4B	Nitric oxide synthase, brain	1.14.13.39	0.496
1dwx	H4B	Nitric oxide synthase, inducible	1.14.13.39	0.495
3rqm	H4B	Nitric oxide synthase, brain	1.14.13.39	0.494
3nlo	H4B	Nitric oxide synthase, brain	1.14.13.39	0.493
3nlz	H4B	Nitric oxide synthase, brain	1.14.13.39	0.493
3pnf	H4B	Nitric oxide synthase, brain	1.14.13.39	0.493
4k5g	H4B	Nitric oxide synthase, brain	1.14.13.39	0.493
1m9t	H4B	Nitric oxide synthase, inducible	1.14.13.39	0.490
1rs7	H4B	Nitric oxide synthase, brain	1.14.13.39	0.490
3e7i	H4B	Nitric oxide synthase, inducible	1.14.13.39	0.490
3n5y	H4B	Nitric oxide synthase, brain	1.14.13.39	0.490
4jse	H4B	Nitric oxide synthase, brain	1.14.13.39	0.490
4fw0	H4B	Nitric oxide synthase, brain	1.14.13.39	0.489
2hx4	H4B	Nitric oxide synthase, brain	1.14.13.39	0.488
3nlq	H4B	Nitric oxide synthase, brain	1.14.13.39	0.486
3jx2	H4B	Nitric oxide synthase, brain	1.14.13.39	0.485
4cx5	H4B	Nitric oxide synthase, brain	1.14.13.39	0.485
4lux	H4B	Nitric oxide synthase, brain	1.14.13.39	0.485
4jsi	H4B	Nitric oxide synthase, brain	1.14.13.39	0.484
3svp	H4B	Nitric oxide synthase, brain	1.14.13.39	0.482
3tyl	H4B	Nitric oxide synthase, brain	1.14.13.39	0.482
3jwv	H4B	Nitric oxide synthase, brain	1.14.13.39	0.481
4jsh	H4B	Nitric oxide synthase, brain	1.14.13.39	0.481
1om5	H4B	Nitric oxide synthase, brain	1.14.13.39	0.478
1p6k	H4B	Nitric oxide synthase, brain	1.14.13.39	0.478
4js9	H4B	Nitric oxide synthase, inducible	1.14.13.39	0.478
3ufu	H4B	Nitric oxide synthase, brain	1.14.13.39	0.477
1m8d	H4B	Nitric oxide synthase, inducible	1.14.13.39	0.476
1zzr	H4B	Nitric oxide synthase, brain	1.14.13.39	0.476
4ux6	H4B	Nitric oxide synthase, inducible	1.14.13.39	0.474
4cx4	H4B	Nitric oxide synthase, brain	1.14.13.39	0.473
3rqj	H4B	Nitric oxide synthase, brain	1.14.13.39	0.471
3rqk	H4B	Nitric oxide synthase, brain	1.14.13.39	0.471
4cx3	H4B	Nitric oxide synthase, brain	1.14.13.39	0.471
1m8h	H4B	Nitric oxide synthase, inducible	1.14.13.39	0.470
5agk	H4B	Nitric oxide synthase, brain	1.14.13.39	0.470
3jt9	H4B	Nitric oxide synthase, brain	1.14.13.39	0.469
3rql	H4B	Nitric oxide synthase, brain	1.14.13.39	0.469
3nlj	H4B	Nitric oxide synthase, brain	1.14.13.39	0.467
2g6i	HBI	Nitric oxide synthase, brain	1.14.13.39	0.465
3jwt	H4B	Nitric oxide synthase, brain	1.14.13.39	0.464
1r35	I58	Nitric oxide synthase, inducible	1.14.13.39	0.462
3ufr	H5W	Nitric oxide synthase, brain	1.14.13.39	0.461
3ufs	H4B	Nitric oxide synthase, brain	1.14.13.39	0.461
3uft	H4B	Nitric oxide synthase, brain	1.14.13.39	0.459
3jt5	H4B	Nitric oxide synthase, brain	1.14.13.39	0.454
3jta	H4B	Nitric oxide synthase, brain	1.14.13.39	0.454
3jx5	H4B	Nitric oxide synthase, brain	1.14.13.39	0.453
5agp	H4B	Nitric oxide synthase, brain	1.14.13.39	0.453
3jx6	H4B	Nitric oxide synthase, brain	1.14.13.39	0.452
3q9a	H4B	Nitric oxide synthase, brain	1.14.13.39	0.451
3fc5	H4B	Nitric oxide synthase, brain	1.14.13.39	0.448
4k5e	1Q7	Nitric oxide synthase, brain	1.14.13.39	0.448
3e7g	AT2	Nitric oxide synthase, inducible	1.14.13.39	0.445
3n60	XFN	Nitric oxide synthase, brain	1.14.13.39	0.443
3jt6	H4B	Nitric oxide synthase, brain	1.14.13.39	0.441
3jt8	H4B	Nitric oxide synthase, brain	1.14.13.39	0.440