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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1q4wDQUQueuine tRNA-ribosyltransferase2.4.2.29

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1q4wDQUQueuine tRNA-ribosyltransferase2.4.2.291.000
1y5xE89Queuine tRNA-ribosyltransferase2.4.2.290.627
4gg90WWQueuine tRNA-ribosyltransferase2.4.2.290.618
3ge7AFQQueuine tRNA-ribosyltransferase2.4.2.290.602
1efzPRFQueuine tRNA-ribosyltransferase2.4.2.290.588
2qzrS79Queuine tRNA-ribosyltransferase2.4.2.290.578
2z1xPRFQueuine tRNA-ribosyltransferase2.4.2.290.571
4gh10WXQueuine tRNA-ribosyltransferase2.4.2.290.569
1f3eDPZQueuine tRNA-ribosyltransferase2.4.2.290.561
1p0ePRFQueuine tRNA-ribosyltransferase2.4.2.290.560
1y5wNEZQueuine tRNA-ribosyltransferase2.4.2.290.547
2bbf344Queuine tRNA-ribosyltransferase2.4.2.290.544
4gh30EVQueuine tRNA-ribosyltransferase2.4.2.290.544
1ozqPRFQueuine tRNA-ribosyltransferase2.4.2.290.536
4giy0WYQueuine tRNA-ribosyltransferase2.4.2.290.536
1q65BHBQueuine tRNA-ribosyltransferase2.4.2.290.526
4q8pCKRQueuine tRNA-ribosyltransferase2.4.2.290.526
4fr10V2Queuine tRNA-ribosyltransferase2.4.2.290.523
1n2vBDIQueuine tRNA-ribosyltransferase2.4.2.290.522
4gi40EXQueuine tRNA-ribosyltransferase2.4.2.290.521
4gkt0O1Queuine tRNA-ribosyltransferase2.4.2.290.521
1q63AIQQueuine tRNA-ribosyltransferase2.4.2.290.520
2potGUNQueuine tRNA-ribosyltransferase2.4.2.290.519
3sm0AEKQueuine tRNA-ribosyltransferase2.4.2.290.519
3gc4AAQQueuine tRNA-ribosyltransferase2.4.2.290.517
4fps0UXQueuine tRNA-ribosyltransferase2.4.2.290.517
3gc52MQQueuine tRNA-ribosyltransferase2.4.2.290.515
1q66KMBQueuine tRNA-ribosyltransferase2.4.2.290.504
4fsa0V3Queuine tRNA-ribosyltransferase2.4.2.290.503
1y5vNE8Queuine tRNA-ribosyltransferase2.4.2.290.498
2z1wBDIQueuine tRNA-ribosyltransferase2.4.2.290.497
1k4hAPQQueuine tRNA-ribosyltransferase2.4.2.290.487
4tvj09LPoly [ADP-ribose] polymerase 22.4.2.300.486
2pwuGUNQueuine tRNA-ribosyltransferase2.4.2.290.484
1k4gAIQQueuine tRNA-ribosyltransferase2.4.2.290.466
4h7zGUNQueuine tRNA-ribosyltransferase2.4.2.290.458
2gjnFMNNitronate monooxygenase1.13.12.160.456
4hqvQEIQueuine tRNA-ribosyltransferase2.4.2.290.454
4gcxPRFQueuine tRNA-ribosyltransferase2.4.2.290.452
1f4fTP3Thymidylate synthase/0.450
3ig6438Urokinase-type plasminogen activator3.4.21.730.449
4zqcF6FTryptophan synthase alpha chain/0.449
1mkdZARcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.444
3otwCOAPhosphopantetheine adenylyltransferase/0.443
4dan2FAPurine nucleoside phosphorylase DeoD-type2.4.2.10.442
2gjlFMNNitronate monooxygenase1.13.12.160.441
2gqg1N1Tyrosine-protein kinase ABL12.7.10.20.441
2iyaZIOOleandomycin glycosyltransferase/0.441