sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 1q0b | NAT | Kinesin-like protein KIF11 |
| PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
|---|---|---|---|---|---|
| 1q0b | NAT | Kinesin-like protein KIF11 | / | 1.000 | |
| 2ieh | MOY | Kinesin-like protein KIF11 | / | 0.630 | |
| 2g1q | N9H | Kinesin-like protein KIF11 | / | 0.620 | |
| 2fme | 3QC | Kinesin-like protein KIF11 | / | 0.618 | |
| 2q2z | MKK | Kinesin-like protein KIF11 | / | 0.618 | |
| 2x7d | EGB | Kinesin-like protein KIF11 | / | 0.618 | |
| 2wog | ZZD | Kinesin-like protein KIF11 | / | 0.595 | |
| 3k3b | L31 | Kinesin-like protein KIF11 | / | 0.584 | |
| 4a51 | DQ8 | Kinesin-like protein KIF11 | / | 0.580 | |
| 2gm1 | 2AZ | Kinesin-like protein KIF11 | / | 0.576 | |
| 4bbg | V02 | Kinesin-like protein KIF11 | / | 0.565 | |
| 3ken | ZZD | Kinesin-like protein KIF11 | / | 0.549 | |
| 2x7e | X7E | Kinesin-like protein KIF11 | / | 0.548 | |
| 2x2r | X2O | Kinesin-like protein KIF11 | / | 0.543 | |
| 4as7 | 6LX | Kinesin-like protein KIF11 | / | 0.543 | |
| 2xae | 2XA | Kinesin-like protein KIF11 | / | 0.518 | |
| 4a5y | G7X | Kinesin-like protein KIF11 | / | 0.510 | |
| 1x88 | NAT | Kinesin-like protein KIF11 | / | 0.472 | |
| 2uxh | QUE | HTH-type transcriptional regulator TtgR | / | 0.471 | |
| 4iay | ADP | cAMP-dependent protein kinase catalytic subunit alpha | 2.7.11.11 | 0.459 | |
| 1xh7 | R96 | cAMP-dependent protein kinase catalytic subunit alpha | 2.7.11.11 | 0.458 | |
| 2bxe | 1FL | Serum albumin | / | 0.456 | |
| 3sn6 | P0G | Beta-2 adrenergic receptor | / | 0.452 | |
| 3wd9 | QPC | cAMP-specific 3',5'-cyclic phosphodiesterase 4B | 3.1.4.53 | 0.449 | |
| 4yqf | GDP | Septin-9 | / | 0.445 | |
| 2uw5 | GVN | cAMP-dependent protein kinase catalytic subunit alpha | 2.7.11.11 | 0.444 | |
| 4aos | NAP | Steroid monooxygenase | / | 0.442 | |
| 2c1a | I5S | cAMP-dependent protein kinase catalytic subunit alpha | 2.7.11.11 | 0.440 | |
| 4m55 | NAD | UDP-glucuronic acid decarboxylase 1 | 4.1.1.35 | 0.440 |