Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1nhtPGSAdenylosuccinate synthetase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1nhtPGSAdenylosuccinate synthetase/1.000
1cg1IMOAdenylosuccinate synthetase/0.763
1kszPGSAdenylosuccinate synthetase/0.716
1cg4IMOAdenylosuccinate synthetase/0.588
1cg3IMOAdenylosuccinate synthetase/0.587
1cg0IMOAdenylosuccinate synthetase/0.579
2gcqDOIAdenylosuccinate synthetase/0.579
1qf5RPLAdenylosuccinate synthetase/0.557
1qf4RPDAdenylosuccinate synthetase/0.551
1p9bIMOAdenylosuccinate synthetase/0.489
1lonIMOAdenylosuccinate synthetase isozyme 1/0.475
2dgnDOIAdenylosuccinate synthetase isozyme 1/0.467