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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1ndcTYDNucleoside diphosphate kinase, cytosolic2.7.4.6

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1ndcTYDNucleoside diphosphate kinase, cytosolic2.7.4.61.000
1buxPPSNucleoside diphosphate kinase, cytosolic2.7.4.60.517
3nguADPNucleoside diphosphate kinase/0.485
4uohADPNucleoside diphosphate kinase/0.484
1nhkCMPNucleoside diphosphate kinase2.7.4.60.476
2hvdADPNucleoside diphosphate kinase A2.7.4.60.460
1nueGDPNucleoside diphosphate kinase B2.7.4.60.457
4uogYYYNucleoside diphosphate kinase/0.444