sc-PDB

List of CHEMBLId :

This value allows a number of roughly comparable measures of half-maximal response concentration/potency/affinity to be compared on a negative logarithmic scale (e.g., an IC50 measurement of 1nM would have a pChEMBL value of 9).

Uniprot Annotation

Name:	Nucleoside diphosphate kinase, cytosolic
ID:	NDKC_DICDI
AC:	P22887
Organism:	Dictyostelium discoideum
Reign:	Eukaryota
TaxID:	44689
EC Number:	2.7.4.6

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Chains:

Chain Name:	Percentage of Residues within binding site
A	100 %

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Ligand binding site composition:

B-Factor:	29.149
Number of residues:	21
Including
Standard Amino Acids:	21
Non Standard Amino Acids:	0
Water Molecules:	0
Cofactors:
Metals:

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Cavity properties

Ligandability	Volume (Å3)
0.201	563.625

% Hydrophobic	% Polar
44.31	55.69
According to VolSite

HET Code:	PPS
Formula:	C10H11N5O13P2S
Molecular weight:	503.233 g/mol
DrugBank ID:	DB02902
Buried Surface Area:	42.83 %
Polar Surface area:	315.29 Å2

Number of
H-Bond Acceptors:	17
H-Bond Donors:	2
Rings:	3
Aromatic rings:	2
Anionic atoms:	4
Cationic atoms:	0
Rule of Five Violation:	2
Rotatable Bonds:	8

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Mass center Coordinates

X	Y	Z
66.7975	33.2027	-1.73206

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