sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Distribution of Cavity similarities measured by Shaper

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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
1mi3	NAD	NAD(P)H-dependent D-xylose reductase	1.1.1.307

Complex with similar cavities

PDB ID	HET	Uniprot Name	EC Number	Cavity Similarity	Align
1mi3	NAD	NAD(P)H-dependent D-xylose reductase	1.1.1.307	1.000
1k8c	NAP	NAD(P)H-dependent D-xylose reductase	1.1.1.307	0.613
1ye4	NAD	NAD(P)H-dependent D-xylose reductase	1.1.1.307	0.609
1sm9	NAD	NAD(P)H-dependent D-xylose reductase	1.1.1.307	0.602
1r38	NAP	NAD(P)H-dependent D-xylose reductase	1.1.1.307	0.584
1ye6	NAD	NAD(P)H-dependent D-xylose reductase	1.1.1.307	0.582
1z9a	NAD	NAD(P)H-dependent D-xylose reductase	1.1.1.307	0.575
1ye6	NAP	NAD(P)H-dependent D-xylose reductase	1.1.1.307	0.472