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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1kszPGSAdenylosuccinate synthetase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1kszPGSAdenylosuccinate synthetase/1.000
1nhtPGSAdenylosuccinate synthetase/0.729
1cg1IMOAdenylosuccinate synthetase/0.674
1cg3IMOAdenylosuccinate synthetase/0.639
1cg4IMOAdenylosuccinate synthetase/0.623
2gcqDOIAdenylosuccinate synthetase/0.590
1qf5RPLAdenylosuccinate synthetase/0.562
1cg0IMOAdenylosuccinate synthetase/0.554
1qf4RPDAdenylosuccinate synthetase/0.545
1lonIMOAdenylosuccinate synthetase isozyme 1/0.531
2dgnDOIAdenylosuccinate synthetase isozyme 1/0.510
1p9bIMOAdenylosuccinate synthetase/0.503
1iolESTEstradiol 17-beta-dehydrogenase 11.1.1.620.458
1f8wFADNADH peroxidase1.11.1.10.454
3b6zCO7Enoyl reductase LovC10.450
3gqvNAPEnoyl reductase LovC10.449
3b70NAPEnoyl reductase LovC10.447
1yb5NAPQuinone oxidoreductase1.6.5.50.442
5dbgNADIridoid synthase1.3.1.990.441