sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Distribution of Cavity similarities measured by Shaper

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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
1khe	GCP	Phosphoenolpyruvate carboxykinase, cytosolic [GTP]	4.1.1.32

Complex with similar cavities

PDB ID	HET	Uniprot Name	EC Number	Cavity Similarity	Align
1khe	GCP	Phosphoenolpyruvate carboxykinase, cytosolic [GTP]	4.1.1.32	1.000
1m51	TSX	Phosphoenolpyruvate carboxykinase, cytosolic [GTP]	4.1.1.32	0.614
3moh	GDP	Phosphoenolpyruvate carboxykinase, cytosolic [GTP]	4.1.1.32	0.550
2qf2	GDP	Phosphoenolpyruvate carboxykinase, cytosolic [GTP]	4.1.1.32	0.498
4wpu	GDP	Phosphoenolpyruvate carboxykinase [GTP]	/	0.479
3dt4	GTP	Phosphoenolpyruvate carboxykinase, cytosolic [GTP]	4.1.1.32	0.464
4r43	GDP	Phosphoenolpyruvate carboxykinase [GTP]	/	0.460
2fah	GDP	Phosphoenolpyruvate carboxykinase [GTP], mitochondrial	4.1.1.32	0.454
4tyq	AP5	Adenylate kinase	/	0.446