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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1jqiFADShort-chain specific acyl-CoA dehydrogenase, mitochondrial

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1jqiFADShort-chain specific acyl-CoA dehydrogenase, mitochondrial/1.000
5jscFADPutative acyl-CoA dehydrogenase/0.555
3nf4FADAcyl-CoA dehydrogenase domain-containing protein/0.551
2z1qFADAcyl-CoA dehydrogenase/0.527
3p4tFAOPutative acyl-CoA dehydrogenase/0.522
3owaFADAcyl-CoA dehydrogenase/0.520
1egdFADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial1.3.8.70.513
3mddFADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial1.3.8.70.513
3pfdFDAAcyl-CoA dehydrogenase FadE25/0.513
1rx0FADIsobutyryl-CoA dehydrogenase, mitochondrial1.3.990.512
4irnFADAnaB/0.506
3r7kFDAProbable acyl CoA dehydrogenase/0.505
3u33FADPutative acyl-CoA dehydrogenase AidB1.3.990.503
2ebaFADPutative glutaryl-CoA dehydrogenase/0.494
4x28FDAAcyl-CoA dehydrogenase FadE26/0.494
4x28FDAAcyl-CoA dehydrogenase FadE27/0.494
5ahsFADAcyl-CoA dehydrogenase/0.484
1egeFADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial1.3.8.70.481
5af7FADAcyl-CoA dehydrogenase/0.481
3mpjFADGlutaryl-CoA dehydrogenase1.3.99.320.471
2ix5FADAcyl-coenzyme A oxidase 4, peroxisomal1.3.3.60.465
2a1tFADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial1.3.8.70.454