sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 1ivh | COS | Isovaleryl-CoA dehydrogenase, mitochondrial | 1.3.8.4 |
| PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
|---|---|---|---|---|---|
| 1ivh | COS | Isovaleryl-CoA dehydrogenase, mitochondrial | 1.3.8.4 | 1.000 | |
| 1jqi | CAA | Short-chain specific acyl-CoA dehydrogenase, mitochondrial | / | 0.514 | |
| 2r0n | TGC | Glutaryl-CoA dehydrogenase, mitochondrial | 1.3.8.6 | 0.497 | |
| 1buc | CAA | Acyl-CoA dehydrogenase, short-chain specific | 1.3.8.1 | 0.495 | |
| 2ix5 | CAA | Acyl-coenzyme A oxidase 4, peroxisomal | 1.3.3.6 | 0.495 | |
| 3mde | CO8 | Medium-chain specific acyl-CoA dehydrogenase, mitochondrial | 1.3.8.7 | 0.491 | |
| 2vig | COS | Short-chain specific acyl-CoA dehydrogenase, mitochondrial | 1.3.8.1 | 0.486 | |
| 1rx0 | 2MC | Isobutyryl-CoA dehydrogenase, mitochondrial | 1.3.99 | 0.485 | |
| 3mpi | GRA | Glutaryl-CoA dehydrogenase | 1.3.99.32 | 0.481 | |
| 4hwk | NAP | Sepiapterin reductase | 1.1.1.153 | 0.477 | |
| 1f8w | FAD | NADH peroxidase | 1.11.1.1 | 0.469 | |
| 1qor | NDP | Quinone oxidoreductase 1 | / | 0.468 | |
| 3pfd | FDA | Acyl-CoA dehydrogenase FadE25 | / | 0.466 | |
| 1egc | CO8 | Medium-chain specific acyl-CoA dehydrogenase, mitochondrial | 1.3.8.7 | 0.458 | |
| 3qwb | NDP | Probable quinone oxidoreductase | 1.6.5.5 | 0.457 | |
| 1dgf | NDP | Catalase | 1.11.1.6 | 0.453 | |
| 3zk5 | Z18 | Cytochrome P450 monooxygenase PikC | / | 0.452 | |
| 4j7u | NAP | Sepiapterin reductase | 1.1.1.153 | 0.451 | |
| 2d29 | FAD | Acyl-CoA dehydrogenase | / | 0.450 | |
| 1nhp | FAD | NADH peroxidase | 1.11.1.1 | 0.449 | |
| 1sir | NBC | Glutaryl-CoA dehydrogenase, mitochondrial | 1.3.8.6 | 0.447 | |
| 2v3a | FAD | Rubredoxin-NAD(+) reductase | 1.18.1.1 | 0.447 | |
| 3pgp | ACO | Uncharacterized protein | / | 0.446 | |
| 1xe5 | 5FE | Plasmepsin-2 | 3.4.23.39 | 0.445 | |
| 2w2l | NAD | D-mandelate dehydrogenase | / | 0.444 | |
| 2y05 | NAP | Prostaglandin reductase 1 | / | 0.444 | |
| 1ksz | PGS | Adenylosuccinate synthetase | / | 0.440 | |
| 4aox | FAD | Steroid monooxygenase | / | 0.440 | |
| 4ly9 | 1YY | Glucokinase regulatory protein | / | 0.440 |