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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1gadNADGlyceraldehyde-3-phosphate dehydrogenase A

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1gadNADGlyceraldehyde-3-phosphate dehydrogenase A/1.000
3idsNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.638
4p8rNADGlyceraldehyde-3-phosphate dehydrogenase/0.637
3pymNADGlyceraldehyde-3-phosphate dehydrogenase 31.2.1.120.629
1dc6NADGlyceraldehyde-3-phosphate dehydrogenase A/0.573
3v1yNADGlyceraldehyde-3-phosphate dehydrogenase 1, cytosolic1.2.1.120.562
1u8fNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.550
4lsmNADGlyceraldehyde-3-phosphate dehydrogenase/0.545
1ywgNADGlyceraldehyde-3-phosphate dehydrogenase/0.544
4z0hNADGlyceraldehyde-3-phosphate dehydrogenase GAPC1, cytosolic1.2.1.120.541
3dmtNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.535
4dbvNDPGlyceraldehyde-3-phosphate dehydrogenase/0.532
1ihyAPRGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.531
3cpsNADGlyceraldehyde-3-phosphate dehydrogenase/0.525
1vsvNADGlyceraldehyde-3-phosphate dehydrogenase/0.523
1j0xNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.522
1ihxSNDGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.520
2dbvNDPGlyceraldehyde-3-phosphate dehydrogenase/0.509
1dbvNADGlyceraldehyde-3-phosphate dehydrogenase/0.506
4o63NADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.505
3zcxNADGlyceraldehyde-3-phosphate dehydrogenase/0.504
5c7oNADGlyceraldehyde-3-phosphate dehydrogenase, testis-specific1.2.1.120.504
4boyNADGlyceraldehyde-3-phosphate dehydrogenase/0.499
3docNADGlyceraldehyde-3-phosphate dehydrogenase/0.498
1gaeNADGlyceraldehyde-3-phosphate dehydrogenase A/0.497
1szjNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.497
3gnqNADGlyceraldehyde-3-phosphate dehydrogenase/0.496
2b4rNADGlyceraldehyde-3-phosphate dehydrogenase/0.495
2ep7NADGlyceraldehyde-3-phosphate dehydrogenase/0.495
1jn0NDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.494
1rm5NDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.494
1vc2NADGlyceraldehyde-3-phosphate dehydrogenase/0.482
3k2bNADGlyceraldehyde-3-phosphate dehydrogenase GAPA1, chloroplastic1.2.1.130.478
3l0dNADGlyceraldehyde-3-phosphate dehydrogenase/0.477
1rm3NDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.463
2pkrNDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.455
3l4sNADGlyceraldehyde-3-phosphate dehydrogenase 1/0.455
4q72FADBifunctional protein PutA/0.450