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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1ef3FIDAldose reductase1.1.1.21

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1ef3FIDAldose reductase1.1.1.211.000
1pwmFIDAldose reductase1.1.1.210.633
3s3gTLTAldose reductase1.1.1.210.618
2iqdLPAAldose reductase1.1.1.210.547
2pdmZSTAldose reductase1.1.1.210.530
1ah0SBIAldose reductase1.1.1.210.520
2pd9FIDAldose reductase1.1.1.210.520
4gabFIDAldo-keto reductase family 1 member B101.1.10.515
3u2cSUZAldose reductase1.1.1.210.509
2hvnZSTAldose reductase1.1.1.210.496
2pdkSBIAldose reductase1.1.1.210.492
1ekoI84Aldose reductase1.1.1.210.490
2f2kTGGAldose reductase1.1.1.210.485
2pdiZSTAldose reductase1.1.1.210.482
2is72CLAldose reductase1.1.1.210.477
3p2vDOYAldose reductase1.1.1.210.473
2nvdITBAldose reductase1.1.1.210.465
2pdyFIDAldose reductase1.1.1.210.465
3v35NTIAldose reductase1.1.1.210.460
2pdg47DAldose reductase1.1.1.210.453
2nvcITAAldose reductase1.1.1.210.451
2pdwFIDAldose reductase1.1.1.210.445