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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1dssNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.12

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1dssNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.121.000
3cifNADGlyceraldehyde-3-phosphate dehydrogenase/0.517
1a7kNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.516
4o59NADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.516
3e5rNADGlyceraldehyde-3-phosphate dehydrogenase 1, cytosolic1.2.1.120.515
1gypNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.513
3lvfNADGlyceraldehyde-3-phosphate dehydrogenase 1/0.497
2vyvNADGlyceraldehyde-3-phosphate dehydrogenase A/0.496
2vynNADGlyceraldehyde-3-phosphate dehydrogenase A/0.492
1qxsNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.480
1ml3NADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.476
3l4sNADGlyceraldehyde-3-phosphate dehydrogenase 1/0.468
3ksdNADGlyceraldehyde-3-phosphate dehydrogenase 1/0.457
3dmtNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.454
1nboNADGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.453
1u8fNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.452
3idsNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.447
4k9dNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.445
4p8rNADGlyceraldehyde-3-phosphate dehydrogenase/0.441
1rm4NDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.440