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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1adcPADAlcohol dehydrogenase E chain1.1.1.1

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1adcPADAlcohol dehydrogenase E chain1.1.1.11.000
1a71NADAlcohol dehydrogenase E chain1.1.1.10.594
4nfhNAJAlcohol dehydrogenase E chain1.1.1.10.579
2ohxNADAlcohol dehydrogenase E chain1.1.1.10.560
2jhfNADAlcohol dehydrogenase E chain1.1.1.10.558
1mgoNADAlcohol dehydrogenase E chain1.1.1.10.556
2oxiNADAlcohol dehydrogenase E chain1.1.1.10.545
4dwvNAJAlcohol dehydrogenase E chain1.1.1.10.539
1adbCNDAlcohol dehydrogenase E chain1.1.1.10.528
1agnNADAlcohol dehydrogenase class 4 mu/sigma chain1.1.1.10.520
1axeNADAlcohol dehydrogenase E chain1.1.1.10.503
4ng5NAJAlcohol dehydrogenase E chain1.1.1.10.500
1ht0NADAlcohol dehydrogenase 1C1.1.1.10.499
1u3vNADAlcohol dehydrogenase 1B1.1.1.10.496
1axgNADAlcohol dehydrogenase E chain1.1.1.10.493
1ldeNADAlcohol dehydrogenase E chain1.1.1.10.491
1e3lNADAlcohol dehydrogenase 41.1.1.10.488
1hszNADAlcohol dehydrogenase 1B1.1.1.10.486
5cdsNAJAlcohol dehydrogenase E chain1.1.1.10.483
5kjfNAJAlcohol dehydrogenase E chain1.1.1.10.473
1hldNADAlcohol dehydrogenase E chain1.1.1.10.471
4dlbNADS-(hydroxymethyl)glutathione dehydrogenase/0.471
4dl9NADS-(hydroxymethyl)glutathione dehydrogenase/0.466
1ma0NADAlcohol dehydrogenase class-31.1.1.10.465
1heuNADAlcohol dehydrogenase E chain1.1.1.10.453
4c4oNADSADH/0.445
2xaaNADSecondary alcohol dehydrogenase/0.442