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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1a8pFADFerredoxin--NADP reductase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1a8pFADFerredoxin--NADP reductase/1.000
3crzFADFerredoxin--NADP+ reductase/0.643
4b4dFADFerredoxin-NADP reductase/0.592
4fk8FADFerredoxin--NADP reductase/0.592
2vnkFADNADPH:ferredoxin reductase/0.564
2vnhFADNADPH:ferredoxin reductase/0.558
2qdxFADFerredoxin--NADP+ reductase/0.555
2bgjFADNADPH:ferredoxin reductase/0.552
2bgiFADNADPH:ferredoxin reductase/0.546
2vnjFADNADPH:ferredoxin reductase/0.546
3muoZPRProlyl endopeptidase/0.453
3s79ASDAromatase1.14.14.140.441