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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1a71NADAlcohol dehydrogenase E chain1.1.1.1

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1a71NADAlcohol dehydrogenase E chain1.1.1.11.000
1axeNADAlcohol dehydrogenase E chain1.1.1.10.676
1adcPADAlcohol dehydrogenase E chain1.1.1.10.603
4nfhNAJAlcohol dehydrogenase E chain1.1.1.10.603
1mgoNADAlcohol dehydrogenase E chain1.1.1.10.585
2oxiNADAlcohol dehydrogenase E chain1.1.1.10.580
4dwvNAJAlcohol dehydrogenase E chain1.1.1.10.565
2ohxNADAlcohol dehydrogenase E chain1.1.1.10.559
2jhfNADAlcohol dehydrogenase E chain1.1.1.10.540
5cdsNAJAlcohol dehydrogenase E chain1.1.1.10.522
1u3vNADAlcohol dehydrogenase 1B1.1.1.10.517
1adbCNDAlcohol dehydrogenase E chain1.1.1.10.510
4ng5NAJAlcohol dehydrogenase E chain1.1.1.10.510
1agnNADAlcohol dehydrogenase class 4 mu/sigma chain1.1.1.10.504
1axgNADAlcohol dehydrogenase E chain1.1.1.10.500
1ht0NADAlcohol dehydrogenase 1C1.1.1.10.497
5kjfNAJAlcohol dehydrogenase E chain1.1.1.10.495
1hszNADAlcohol dehydrogenase 1B1.1.1.10.489
1hldNADAlcohol dehydrogenase E chain1.1.1.10.487
1ldeNADAlcohol dehydrogenase E chain1.1.1.10.476