sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Sites are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 5f1x | ATP | 78 kDa glucose-regulated protein |
| PDB ID | HET | Uniprot Name | EC Number | Binding Site Similarity |
Align |
|---|---|---|---|---|---|
| 5f1x | ATP | 78 kDa glucose-regulated protein | / | 1.000 | |
| 5f2r | ACP | 78 kDa glucose-regulated protein | / | 0.523 | |
| 1ngb | ADP | Heat shock cognate 71 kDa protein | / | 0.516 | |
| 1ats | ADP | Heat shock cognate 71 kDa protein | / | 0.507 | |
| 3ldp | 3P1 | 78 kDa glucose-regulated protein | / | 0.484 | |
| 5aqz | SGV | Heat shock 70 kDa protein 1A | / | 0.477 | |
| 4k41 | ATP | Actin, alpha skeletal muscle | / | 0.469 | |
| 1nge | ATP | Heat shock cognate 71 kDa protein | / | 0.465 | |
| 1lot | ATP | Actin, alpha skeletal muscle | / | 0.462 | |
| 1kxp | ATP | Actin, alpha skeletal muscle | / | 0.461 | |
| 1t44 | ATP | Actin, alpha skeletal muscle | / | 0.460 | |
| 2qwl | ADP | Heat shock cognate 71 kDa protein | / | 0.460 | |
| 4pki | ATP | Actin, alpha skeletal muscle | / | 0.459 | |
| 4k42 | ADP | Actin, alpha skeletal muscle | / | 0.455 | |
| 1c0f | ATP | Major actin | / | 0.453 | |
| 1ngc | ADP | Heat shock cognate 71 kDa protein | / | 0.448 | |
| 1nm1 | ATP | Major actin | / | 0.446 | |
| 3w3d | ATP | Actin, gamma-enteric smooth muscle | / | 0.443 | |
| 1ngd | ADP | Heat shock cognate 71 kDa protein | / | 0.442 |