2.200 Å
X-ray
2010-01-13
| Min | Mean | Median | Standard Deviation | Max | Count | |
|---|---|---|---|---|---|---|
| pChEMBL: | 5.620 | 5.620 | 5.620 | 0.000 | 5.620 | 1 |
| Name: | 78 kDa glucose-regulated protein |
|---|---|
| ID: | GRP78_HUMAN |
| AC: | P11021 |
| Organism: | Homo sapiens |
| Reign: | Eukaryota |
| TaxID: | 9606 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 35.883 |
|---|---|
| Number of residues: | 32 |
| Including | |
| Standard Amino Acids: | 31 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 1 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.859 | 1366.875 |
| % Hydrophobic | % Polar |
|---|---|
| 40.25 | 59.75 |
| According to VolSite | |

| HET Code: | 3P1 |
|---|---|
| Formula: | C20H21N7O4 |
| Molecular weight: | 423.425 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 59.02 % |
| Polar Surface area: | 164.46 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 10 |
| H-Bond Donors: | 5 |
| Rings: | 5 |
| Aromatic rings: | 4 |
| Anionic atoms: | 0 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 1 |
| Rotatable Bonds: | 5 |
| X | Y | Z |
|---|---|---|
| 17.5221 | -9.14671 | 5.35152 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C28 | CE1 | TYR- 39 | 3.53 | 0 | Hydrophobic |
| C17 | CD1 | ILE- 61 | 4.23 | 0 | Hydrophobic |
| C21 | CD1 | ILE- 61 | 4.2 | 0 | Hydrophobic |
| O31 | OE1 | GLU- 293 | 2.62 | 136.2 | H-Bond (Ligand Donor) |
| O31 | OE2 | GLU- 293 | 2.95 | 153.49 | H-Bond (Ligand Donor) |
| O30 | NZ | LYS- 296 | 3.49 | 126.1 | H-Bond (Protein Donor) |
| O31 | NZ | LYS- 296 | 2.67 | 133.49 | H-Bond (Protein Donor) |
| C24 | CD | ARG- 297 | 4.46 | 0 | Hydrophobic |
| C22 | CD | ARG- 297 | 4.2 | 0 | Hydrophobic |
| DuAr | CZ | ARG- 297 | 3.36 | 3.18 | Pi/Cation |
| N1 | OG | SER- 300 | 2.6 | 148.14 | H-Bond (Protein Donor) |