2.200 Å
X-ray
2010-01-13
Min | Mean | Median | Standard Deviation | Max | Count | |
---|---|---|---|---|---|---|
pChEMBL: | 5.620 | 5.620 | 5.620 | 0.000 | 5.620 | 1 |
Name: | 78 kDa glucose-regulated protein |
---|---|
ID: | GRP78_HUMAN |
AC: | P11021 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 35.883 |
---|---|
Number of residues: | 32 |
Including | |
Standard Amino Acids: | 31 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 1 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.859 | 1366.875 |
% Hydrophobic | % Polar |
---|---|
40.25 | 59.75 |
According to VolSite |
HET Code: | 3P1 |
---|---|
Formula: | C20H21N7O4 |
Molecular weight: | 423.425 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 59.02 % |
Polar Surface area: | 164.46 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 10 |
H-Bond Donors: | 5 |
Rings: | 5 |
Aromatic rings: | 4 |
Anionic atoms: | 0 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 5 |
X | Y | Z |
---|---|---|
17.5221 | -9.14671 | 5.35152 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C28 | CE1 | TYR- 39 | 3.53 | 0 | Hydrophobic |
C17 | CD1 | ILE- 61 | 4.23 | 0 | Hydrophobic |
C21 | CD1 | ILE- 61 | 4.2 | 0 | Hydrophobic |
O31 | OE1 | GLU- 293 | 2.62 | 136.2 | H-Bond (Ligand Donor) |
O31 | OE2 | GLU- 293 | 2.95 | 153.49 | H-Bond (Ligand Donor) |
O30 | NZ | LYS- 296 | 3.49 | 126.1 | H-Bond (Protein Donor) |
O31 | NZ | LYS- 296 | 2.67 | 133.49 | H-Bond (Protein Donor) |
C24 | CD | ARG- 297 | 4.46 | 0 | Hydrophobic |
C22 | CD | ARG- 297 | 4.2 | 0 | Hydrophobic |
DuAr | CZ | ARG- 297 | 3.36 | 3.18 | Pi/Cation |
N1 | OG | SER- 300 | 2.6 | 148.14 | H-Bond (Protein Donor) |