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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
5a8aFMNRiboflavin biosynthesis protein RibF2.7.1.26

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
5a8aFMNRiboflavin biosynthesis protein RibF2.7.1.261.000
5a89FMNRiboflavin biosynthesis protein RibF2.7.1.260.571
1fm4DXCMajor pollen allergen Bet v 1-L/0.475
1n07FMNRiboflavin kinase2.7.1.260.472
5e8ySTUTGF-beta receptor type-22.7.11.300.456
3u9n09HSerine/threonine-protein kinase Chk12.7.11.10.453
1um0FMNChorismate synthase/0.452
2xj2985Serine/threonine-protein kinase pim-12.7.11.10.452
4fkr45KCyclin-dependent kinase 22.7.11.220.450
4ap7F47Hepatocyte growth factor receptor2.7.10.10.449
1in5ADPHolliday junction ATP-dependent DNA helicase RuvB/0.448
3sheI85MAP kinase-activated protein kinase 32.7.11.10.448
4ek816KCyclin-dependent kinase 22.7.11.220.448
4gg70J8Hepatocyte growth factor receptor2.7.10.10.448
4ijp1EHSerine/threonine-protein kinase PRP4 homolog2.7.11.10.448
1pdhFASp-hydroxybenzoate hydroxylase/0.447
2xtzGSPGuanine nucleotide-binding protein alpha-1 subunit/0.447
2emuSAHDiphthine synthase/0.446
3gwfFADCyclohexanone monooxygenase/0.446
4hle17VPhosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.446
4i6aHMG3-hydroxy-3-methylglutaryl-coenzyme A reductase1.1.1.880.446
1c9k5GPBifunctional adenosylcobalamin biosynthesis protein CobU/0.444
1np7FADCryptochrome DASH/0.444
1nzdUPGDNA beta-glucosyltransferase/0.444
3hyoADPPyridoxal kinase/0.444
3jpuTY4Transcriptional activator protein LasR/0.444
3umoATPATP-dependent 6-phosphofructokinase isozyme 22.7.1.110.444
1oitHDTCyclin-dependent kinase 22.7.11.220.443
1v0pPVBCell division control protein 2 homolog2.7.11.220.443
1zys199Serine/threonine-protein kinase Chk12.7.11.10.443
2c0iL1GTyrosine-protein kinase HCK2.7.10.20.443
1urwI1PCyclin-dependent kinase 22.7.11.220.442
1pn3TYDdTDP-epi-vancosaminyltransferase2.4.1.3110.441
2ch6ADPN-acetyl-D-glucosamine kinase2.7.1.590.441
2y9qANPMitogen-activated protein kinase 12.7.11.240.441
2zxuDSTtRNA dimethylallyltransferase2.5.1.750.441
3zw3ZW3Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.441
1zrzBI1Protein kinase C iota type2.7.11.130.440