Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
5a02NAPGlucose-fructose oxidoreductase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
5a02NAPGlucose-fructose oxidoreductase/1.000
5a06NDPGlucose-fructose oxidoreductase/0.698
5a03NDPGlucose-fructose oxidoreductase/0.655
5a04NDPGlucose-fructose oxidoreductase/0.635
5a05NDPGlucose-fructose oxidoreductase/0.612
1rydNDPGlucose--fructose oxidoreductase1.1.99.280.569
1h6bNDPGlucose--fructose oxidoreductase1.1.99.280.563
1h6cNDPGlucose--fructose oxidoreductase1.1.99.280.551
1h6aNDPGlucose--fructose oxidoreductase1.1.99.280.536
1h6dNDPGlucose--fructose oxidoreductase1.1.99.280.535
1ofgNDPGlucose--fructose oxidoreductase1.1.99.280.524
1ryeNDPGlucose--fructose oxidoreductase1.1.99.280.519
1evjNADGlucose--fructose oxidoreductase1.1.99.280.498
1zh8NAPUncharacterized protein/0.470
2glxNDP1,5-anhydro-D-fructose reductase/0.441