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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4yjdFADD-amino-acid oxidase1.4.3.3

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4yjdFADD-amino-acid oxidase1.4.3.31.000
1kifFADD-amino-acid oxidase1.4.3.30.560
1ve9FADD-amino-acid oxidase1.4.3.30.543
2du8FADD-amino-acid oxidase1.4.3.30.522
2e48FADD-amino-acid oxidase1.4.3.30.515
3axbFADPutative oxidoreductase/0.490
3vqrFADPutative oxidoreductase/0.474
3gd3FADApoptosis-inducing factor 1, mitochondrial1.1.10.471
4yshFADGlycine oxidase/0.467
3if9FADGlycine oxidase1.4.3.190.462
1graFADGlutathione reductase, mitochondrial1.8.1.70.453
2rgoFADAlpha-Glycerophosphate Oxidase/0.451
3d8bADPFidgetin-like protein 13.6.40.450
4x9nFADUncharacterized protein MG039 homolog/0.447