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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4udqFAD5-(hydroxymethyl)furfural oxidase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4udqFAD5-(hydroxymethyl)furfural oxidase/1.000
4udrFAD5-(hydroxymethyl)furfural oxidase/0.724
5hsaFASAlcohol oxidase 11.1.3.130.530
4qi7FADCellobiose dehydrogenase/0.529
4qi4FADCellobiose dehydrogenase/0.525
4u2lSFDCholesterol oxidase1.1.3.60.514
3coxFADCholesterol oxidase1.1.3.60.509
1mxtFAECholesterol oxidase1.1.3.60.502
1n4uFAECholesterol oxidase1.1.3.60.500
5eb5FAD(R)-mandelonitrile lyase 14.1.2.100.497
4qi5FADCellobiose dehydrogenase/0.495
4z26FADPutative GMC-type oxidoreductase R13510.494
3gyjFADCholesterol oxidase1.1.3.60.489
1b4vFADCholesterol oxidase1.1.3.60.481
1cboFADCholesterol oxidase1.1.3.60.481
3cnjFADCholesterol oxidase1.1.3.60.480
4u2sFDACholesterol oxidase1.1.3.60.480
1ijhFADCholesterol oxidase1.1.3.60.478
1ju2FAD(R)-mandelonitrile lyase 24.1.2.100.478
3gyiFADCholesterol oxidase1.1.3.60.477
4xwrFADCholesterol oxidase1.1.3.60.477
4xxgFADCholesterol oxidase1.1.3.60.477
4rekFADCholesterol oxidase1.1.3.60.476
1b8sFADCholesterol oxidase1.1.3.60.475
1cc2FADCholesterol oxidase1.1.3.60.472
1galFADGlucose oxidase1.1.3.40.472
4yntFDAGlucose oxidase, putative/0.469
1n4vFADCholesterol oxidase1.1.3.60.465
2igoFADPyranose 2-oxidase/0.461
3bg7FADPyranose 2-oxidase/0.461
3vqrFADPutative oxidoreductase/0.461
1cf3FADGlucose oxidase1.1.3.40.454
2rgoFADAlpha-Glycerophosphate Oxidase/0.451
3q9tFAYUncharacterized protein/0.451
3k4nFADPyranose 2-oxidase/0.450
4mihFADPyranose 2-oxidase1.1.3.100.448
1k4qFADGlutathione reductase, mitochondrial1.8.1.70.442