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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4u2tFADCholesterol oxidase1.1.3.6

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4u2tFADCholesterol oxidase1.1.3.61.000
4xwrFADCholesterol oxidase1.1.3.60.782
3gyjFADCholesterol oxidase1.1.3.60.767
1b4vFADCholesterol oxidase1.1.3.60.749
3b6dFAECholesterol oxidase1.1.3.60.733
4xxgFADCholesterol oxidase1.1.3.60.723
1n4vFADCholesterol oxidase1.1.3.60.720
1n4wFADCholesterol oxidase1.1.3.60.692
3gyiFADCholesterol oxidase1.1.3.60.686
1b8sFADCholesterol oxidase1.1.3.60.683
1n1pFADCholesterol oxidase1.1.3.60.683
4rekFADCholesterol oxidase1.1.3.60.672
2gewFADCholesterol oxidase1.1.3.60.667
3cnjFADCholesterol oxidase1.1.3.60.623
1ijhFADCholesterol oxidase1.1.3.60.582
3coxFADCholesterol oxidase1.1.3.60.574
3lshFADPyranose 2-oxidase/0.482
4mokFADPyranose 2-oxidase/0.477
5eb5FAD(R)-mandelonitrile lyase 14.1.2.100.472
5hsaFASAlcohol oxidase 11.1.3.130.472
4udrFAD5-(hydroxymethyl)furfural oxidase/0.470
4udqFAD5-(hydroxymethyl)furfural oxidase/0.465
3b70NAPEnoyl reductase LovC10.461
2ylzFADPhenylacetone monooxygenase1.14.13.920.460
4l9q9TPSerum albumin/0.460
4is3NAD3alpha-hydroxy bile acid-CoA-ester 3-dehydrogenase 21.17.98.10.456
3wmxNADNAD dependent epimerase/dehydratase/0.455
1tj0FADBifunctional protein PutA1.5.5.20.454
3k4cFADPyranose 2-oxidase/0.454
3ox4NADAlcohol dehydrogenase 21.1.1.10.453
3t2zFADSulfide-quinone reductase/0.452
2d1yNADOxidoreductase, short-chain dehydrogenase/reductase family/0.450
4tm1FDAKtzI/0.449
2gv8FADThiol-specific monooxygenase1.14.130.447
4cr8NADN-acylmannosamine 1-dehydrogenase1.1.1.2330.447
1zmdNAIDihydrolipoyl dehydrogenase, mitochondrial1.8.1.40.446
4fj0NAP17beta-hydroxysteroid dehydrogenase/0.446
4yntFDAGlucose oxidase, putative/0.445
1ju2FAD(R)-mandelonitrile lyase 24.1.2.100.444
2dknNAI3-alpha-hydroxysteroid dehydrogenase/0.444
1edoNAP3-oxoacyl-[acyl-carrier-protein] reductase 1, chloroplastic1.1.1.1000.443
4b65FADL-ornithine N(5)-monooxygenase/0.442
4fj1NAP17beta-hydroxysteroid dehydrogenase/0.440