Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4rpgGDUUDP-galactopyranose mutase5.4.99.9

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4rpgGDUUDP-galactopyranose mutase5.4.99.91.000
3hdyGDUUDP-galactopyranose mutase/0.626
3hdqGDUUDP-galactopyranose mutase/0.606
4rphGDUUDP-galactopyranose mutase5.4.99.90.596
3intGDUUDP-galactopyranose mutase5.4.99.90.509
3mj4URMUDP-galactopyranose mutase/0.503
3gf4UPGUDP-galactopyranose mutase5.4.99.90.472
3ukfGDUUDP-galactopyranose mutase/0.468
4kbyC2EStimulator of interferon genes protein/0.459
1k4mNADNicotinate-nucleotide adenylyltransferase2.7.7.180.455
3tqcADPPantothenate kinase/0.453
2xq0BESLeukotriene A-4 hydrolase homolog3.3.2.60.440