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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4qi5FADCellobiose dehydrogenase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4qi5FADCellobiose dehydrogenase/1.000
4qi4FADCellobiose dehydrogenase/0.688
4qi7FADCellobiose dehydrogenase/0.650
1cc2FADCholesterol oxidase1.1.3.60.527
4u2lSFDCholesterol oxidase1.1.3.60.511
1mxtFAECholesterol oxidase1.1.3.60.505
4u2sFDACholesterol oxidase1.1.3.60.504
1n4uFAECholesterol oxidase1.1.3.60.502
5hsaFASAlcohol oxidase 11.1.3.130.488
1cboFADCholesterol oxidase1.1.3.60.479
3cnjFADCholesterol oxidase1.1.3.60.476
4mihFADPyranose 2-oxidase1.1.3.100.474
4yntFDAGlucose oxidase, putative/0.468
3gyjFADCholesterol oxidase1.1.3.60.465
3coxFADCholesterol oxidase1.1.3.60.463
5eb5FAD(R)-mandelonitrile lyase 14.1.2.100.463
3gyiFADCholesterol oxidase1.1.3.60.461
4rekFADCholesterol oxidase1.1.3.60.461
1cf3FADGlucose oxidase1.1.3.40.456
2ignFADPyranose 2-oxidase/0.456
4xxgFADCholesterol oxidase1.1.3.60.455
1n4vFADCholesterol oxidase1.1.3.60.454
1ijhFADCholesterol oxidase1.1.3.60.453
3k4nFADPyranose 2-oxidase/0.450
4xwrFADCholesterol oxidase1.1.3.60.450
3bg7FADPyranose 2-oxidase/0.449
2igoFADPyranose 2-oxidase/0.448
1b8sFADCholesterol oxidase1.1.3.60.446
4udrFAD5-(hydroxymethyl)furfural oxidase/0.444
4udqFAD5-(hydroxymethyl)furfural oxidase/0.443