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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4qi4FADCellobiose dehydrogenase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4qi4FADCellobiose dehydrogenase/1.000
4qi5FADCellobiose dehydrogenase/0.657
4qi7FADCellobiose dehydrogenase/0.637
1cc2FADCholesterol oxidase1.1.3.60.480
1mxtFAECholesterol oxidase1.1.3.60.475
1n4uFAECholesterol oxidase1.1.3.60.471
4u2lSFDCholesterol oxidase1.1.3.60.468
4u2sFDACholesterol oxidase1.1.3.60.466
3coxFADCholesterol oxidase1.1.3.60.463
5hsaFASAlcohol oxidase 11.1.3.130.461
4mihFADPyranose 2-oxidase1.1.3.100.450
4yntFDAGlucose oxidase, putative/0.446
1cf3FADGlucose oxidase1.1.3.40.443
3gyjFADCholesterol oxidase1.1.3.60.443
1cboFADCholesterol oxidase1.1.3.60.442