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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4lvb20NNicotinamide phosphoribosyltransferase2.4.2.12

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4lvb20NNicotinamide phosphoribosyltransferase2.4.2.121.000
4jr51LSNicotinamide phosphoribosyltransferase2.4.2.120.791
4lwwLWWNicotinamide phosphoribosyltransferase2.4.2.120.731
2gvjDGBNicotinamide phosphoribosyltransferase2.4.2.120.659
4ltsLTSNicotinamide phosphoribosyltransferase2.4.2.120.636
4kfn1QRNicotinamide phosphoribosyltransferase2.4.2.120.627
4jnm1LJNicotinamide phosphoribosyltransferase2.4.2.120.626
4lva20MNicotinamide phosphoribosyltransferase2.4.2.120.621
4kfo1QSNicotinamide phosphoribosyltransferase2.4.2.120.620
4o1dDGBNicotinamide phosphoribosyltransferase2.4.2.120.614
4m6q20TNicotinamide phosphoribosyltransferase2.4.2.120.612
4kfp1R7Nicotinamide phosphoribosyltransferase2.4.2.120.610
4m6p20RNicotinamide phosphoribosyltransferase2.4.2.120.603
4o281QSNicotinamide phosphoribosyltransferase2.4.2.120.595
3g8eIS1Nicotinamide phosphoribosyltransferase2.4.2.120.485
4o1bDGBNicotinamide phosphoribosyltransferase2.4.2.120.475
2g97DGBNicotinamide phosphoribosyltransferase2.4.2.120.467
2vr1ATFBiotin carboxylase6.3.4.140.449