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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4lj3C2ECyclic di-GMP phosphodiesterase YahA3.1.4

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4lj3C2ECyclic di-GMP phosphodiesterase YahA3.1.41.000
1dssNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.463
4z07PCGcGMP-dependent protein kinase 12.7.11.120.463
4wq5ATPtRNA N6-adenosine threonylcarbamoyltransferase/0.456
4wq4ATPtRNA N6-adenosine threonylcarbamoyltransferase/0.448
1j39UPGDNA beta-glucosyltransferase/0.445
4dtaADNAPH(2'')-Id/0.445
1hxbROCGag-Pol polyprotein3.4.23.160.441
3zewSTUEphrin type-B receptor 42.7.10.10.441
4h4uNDPBiphenyl dioxygenase ferredoxin reductase subunit/0.441
3pwm017Gag-Pol polyprotein3.4.23.160.440
3qroNK9Gag-Pol polyprotein3.4.23.160.440
4bc6XZNSerine/threonine-protein kinase 102.7.11.10.440